View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18532_high_16 (Length: 370)
Name: NF18532_high_16
Description: NF18532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18532_high_16 |
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Alignment Details
Target: chr2 (Bit Score: 319; Significance: 1e-180; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 29 - 355
Target Start/End: Original strand, 11889876 - 11890202
Alignment:
| Q |
29 |
tacaaatcaaaaacaccgccaatcaccttataagtaagacgatcaccgctataaacaacatccattccattactattaagaagtaaaacaccatgtgtgg |
128 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
11889876 |
tacaaatcaaaaacaccaccaatcaccttataagtaagacgatcaccgctataaacaacatccattccattactattaagaagtaaaacaccatgtgtag |
11889975 |
T |
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| Q |
129 |
tcccacttttcactcttccatcagatgaaccctttctcacatccaaataaaatggatgagagccataaagattcacatcaacattagaactaccaatatc |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11889976 |
tcccacttttcactcttccatcagatgaaccctttctcacatccaaataaaatggatgagagccataaagattcacatcaacattagaactaccaatatc |
11890075 |
T |
|
| Q |
229 |
ttcattccaaagagtgaaagtttggtttggtttcaacttgaaagaactctttgtatgctctccaaaaccatacagagaagctctttttgaaggcagagag |
328 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11890076 |
ttcattccaaagagtgaaagtttggtttggtttcaacttgaaagaactctttgtatgctctccaaaaccatacagagaagctctttttgaaggcagagag |
11890175 |
T |
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| Q |
329 |
gtagaaatctgcaagtactgttctttg |
355 |
Q |
| |
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||||||||||||||||||||||||||| |
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| T |
11890176 |
gtagaaatctgcaagtactgttctttg |
11890202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 29 - 355
Target Start/End: Original strand, 11902220 - 11902546
Alignment:
| Q |
29 |
tacaaatcaaaaacaccgccaatcaccttataagtaagacgatcaccgctataaacaacatccattccattactattaagaagtaaaacaccatgtgtgg |
128 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
11902220 |
tacaaatcaaaaacaccaccaatcaccttataagtaagacgatcaccgctataaacaacatccattccattactattaagaagtaaaacaccatgtgtag |
11902319 |
T |
|
| Q |
129 |
tcccacttttcactcttccatcagatgaaccctttctcacatccaaataaaatggatgagagccataaagattcacatcaacattagaactaccaatatc |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11902320 |
tcccacttttcactcttccatcagatgaaccctttctcacatccaaataaaatggatgagagccataaagattcacatcaacattagaactaccaatatc |
11902419 |
T |
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| Q |
229 |
ttcattccaaagagtgaaagtttggtttggtttcaacttgaaagaactctttgtatgctctccaaaaccatacagagaagctctttttgaaggcagagag |
328 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11902420 |
ttcattccaaagagtgaaagtttggtttggtttcaacttgaaagaactctttgtatgctctccaaaaccatacagagaagctctttttgaaggcagagag |
11902519 |
T |
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| Q |
329 |
gtagaaatctgcaagtactgttctttg |
355 |
Q |
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||||||||||||||||||||||||||| |
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| T |
11902520 |
gtagaaatctgcaagtactgttctttg |
11902546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 29 - 117
Target Start/End: Original strand, 11896554 - 11896642
Alignment:
| Q |
29 |
tacaaatcaaaaacaccgccaatcaccttataagtaagacgatcaccgctataaacaacatccattccattactattaagaagtaaaac |
117 |
Q |
| |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11896554 |
tacaaatcaaaaacaccaccaatcaccttataagtaagacgatcaccgctataaacaacatccattccattactattaagaagtaaaac |
11896642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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