View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18532_high_18 (Length: 363)
Name: NF18532_high_18
Description: NF18532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18532_high_18 |
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Alignment Details
Target: chr3 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 5 - 353
Target Start/End: Original strand, 44281206 - 44281554
Alignment:
| Q |
5 |
gcattcatctgtggaaaactagtcctgagaaaatactgcctcagatgactattcaaatattgcaacttgtttcaaagcagtactaactaacaagtttgaa |
104 |
Q |
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| T |
44281206 |
gcattcatctgtggaaaaatagtcctgagaaaatactgcctcagatgactattcaaatattgcaacttgtttcaaagcagtactaactaacaagtttgaa |
44281305 |
T |
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| Q |
105 |
tctttcaactgaaaaatatattgggttagttacatattattcctcttcttcttatatgaattatgctgttttaagaatcctcatgtaactccctatttct |
204 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44281306 |
tctttcaactgaaacatatattgggttagttacatattattcctcttcttcttatatgaattatgctgttttaagaatcctcatgtaactccctatttct |
44281405 |
T |
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| Q |
205 |
gttccactgaactccatatttctcnnnnnnnnnnnnnnnnnnncaagaatacgcaagaacttctcaagagaatccttgttacatggggactgagaccagt |
304 |
Q |
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|||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
44281406 |
gttccactgaacaccatatttctctttttttctttttctttttcaagaatacgcaagaacttctcaagagaatccttgttacatggggactgagactagt |
44281505 |
T |
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| Q |
305 |
gttgttccggaagtgacagaaaacatagctatggattcagcagagaaga |
353 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
44281506 |
gttgttccagaagtgacagaaaacatagctatggattcagcagagaaga |
44281554 |
T |
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