View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18532_high_23 (Length: 347)

Name: NF18532_high_23
Description: NF18532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18532_high_23
NF18532_high_23
[»] chr2 (6 HSPs)
chr2 (18-331)||(32164658-32164971)
chr2 (219-328)||(13284068-13284177)
chr2 (18-143)||(13284187-13284312)
chr2 (285-328)||(4580581-4580624)
chr2 (18-70)||(7497055-7497107)
chr2 (18-62)||(43822900-43822944)
[»] chr7 (7 HSPs)
chr7 (17-326)||(43079916-43080220)
chr7 (8-144)||(21809217-21809352)
chr7 (257-308)||(21809157-21809208)
chr7 (22-61)||(1076071-1076110)
chr7 (18-61)||(26942280-26942323)
chr7 (18-61)||(44970097-44970140)
chr7 (294-331)||(1075803-1075840)
[»] chr4 (6 HSPs)
chr4 (17-239)||(8823417-8823639)
chr4 (208-330)||(49083878-49084000)
chr4 (272-327)||(8823349-8823402)
chr4 (295-330)||(35187357-35187392)
chr4 (285-326)||(5232311-5232352)
chr4 (25-65)||(27993722-27993762)
[»] scaffold0097 (2 HSPs)
scaffold0097 (152-330)||(47254-47433)
scaffold0097 (19-192)||(47457-47630)
[»] chr5 (6 HSPs)
chr5 (18-192)||(14028167-14028345)
chr5 (213-330)||(16967121-16967238)
chr5 (18-65)||(28480716-28480763)
chr5 (19-61)||(4428886-4428928)
chr5 (262-328)||(14028048-14028114)
chr5 (18-86)||(37101799-37101867)
[»] chr6 (2 HSPs)
chr6 (18-65)||(29968705-29968752)
chr6 (22-61)||(3419020-3419059)
[»] scaffold0648 (1 HSPs)
scaffold0648 (18-70)||(4572-4624)
[»] scaffold0274 (1 HSPs)
scaffold0274 (18-70)||(4042-4094)
[»] chr1 (5 HSPs)
chr1 (18-61)||(4198227-4198270)
chr1 (18-61)||(36565778-36565821)
chr1 (259-329)||(25160481-25160551)
chr1 (19-65)||(25160637-25160682)
chr1 (285-325)||(49289933-49289973)
[»] chr8 (2 HSPs)
chr8 (285-327)||(19779742-19779784)
chr8 (18-50)||(19779868-19779900)
[»] chr3 (6 HSPs)
chr3 (145-191)||(43410267-43410312)
chr3 (23-61)||(47099852-47099890)
chr3 (294-331)||(47100123-47100160)
chr3 (18-62)||(8541123-8541167)
chr3 (17-61)||(25644602-25644646)
chr3 (18-70)||(47278331-47278382)


Alignment Details
Target: chr2 (Bit Score: 173; Significance: 6e-93; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 18 - 331
Target Start/End: Complemental strand, 32164971 - 32164658
Alignment:
Q  18 caggtgccactgcaccccccagttttcatataaatatcatattaggcaaaataatttagttaatacgttctgttcaagtggtaatgcgttctctcaacct 117  Q
    |||||||||||| |||||| |||||| |||||||||| |||||||||| ||||||  |||||||| ||||||||  |||||||||| ||||||||||||     
T  32164971 caggtgccactgtacccccgagttttgatataaatattatattaggcataataatcaagttaatatgttctgtttcagtggtaatgtgttctctcaaccc 32164872  T
Q  118 attgcatgtctcgagttcgatccctccaacaccctcctttttaataattcttagcgaatttttgatattttattcnnnnnnntagccctggtgggatttg 217  Q
    ||||| |||| ||||||| ||||||||  |||||||||||||||||||||||||||||||||| |||||||||||       | ||||| ||||||||      
T  32164871 attgcgtgtcccgagttcaatccctccggcaccctcctttttaataattcttagcgaatttttcatattttattcaaaaaattggccctagtgggattca 32164772  T
Q  218 aaccagcatcctccttgtaccaaccaaggatttgtacccctacaccaatttaccatgttgtacataatttgaaaacgtttaatatatatttcataaatat 317  Q
    |||||||||||| ||||||||||||||| ||||||||| |||||||| ||||| ||||||||||| ||||||||||| |||||||||||||||||||||     
T  32164771 aaccagcatcctacttgtaccaaccaagcatttgtaccactacaccagtttactatgttgtacattatttgaaaacgcttaatatatatttcataaatag 32164672  T
Q  318 ttggcacccccgaa 331  Q
    ||||||||||||||    
T  32164671 ttggcacccccgaa 32164658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 219 - 328
Target Start/End: Complemental strand, 13284177 - 13284068
Alignment:
Q  219 accagcatcctccttgtaccaaccaaggatttgtacccctacaccaatttaccatgttgtacataatttgaaaacgtttaatatatatttcataaatatt 318  Q
    |||| |||||||||| ||||||||||| ||||||||| |||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||    
T  13284177 accaacatcctccttataccaaccaagcatttgtaccactacaccagtttactatgttgtacattatttgaaaacgtttaatatatatttcataaatatt 13284078  T
Q  319 tggcaccccc 328  Q
    ||||||||||    
T  13284077 tggcaccccc 13284068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 18 - 143
Target Start/End: Complemental strand, 13284312 - 13284187
Alignment:
Q  18 caggtgccactgcaccccccagttttcatataaatatcatattaggcaaaataatttagttaatacgttctgttcaagtggtaatgcgttctctcaacct 117  Q
    ||||||||||||||||| |||||||| ||||||||||||||||||||| ||||||| |||||||| ||||||||  ||||||| |||||||||||||||     
T  13284312 caggtgccactgcacccaccagttttgatataaatatcatattaggcataataattcagttaatatgttctgttgcagtggtattgcgttctctcaaccc 13284213  T
Q  118 attgcatgtctcgagttcgatccctc 143  Q
     |||| |||| |||||||||||||||    
T  13284212 gttgcgtgtcccgagttcgatccctc 13284187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 285 - 328
Target Start/End: Complemental strand, 4580624 - 4580581
Alignment:
Q  285 tttgaaaacgtttaatatatatttcataaatatttggcaccccc 328  Q
    ||||||| | |||||||||||||||||| |||||||||||||||    
T  4580624 tttgaaaccatttaatatatatttcatatatatttggcaccccc 4580581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 7497055 - 7497107
Alignment:
Q  18 caggtgccactgcaccccccagttttcatataaatatcatattaggcaaaata 70  Q
    |||||||||||| ||||||||   || ||||||||||||||||||||| ||||    
T  7497055 caggtgccactggaccccccaacatttatataaatatcatattaggcataata 7497107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 43822944 - 43822900
Alignment:
Q  18 caggtgccactgcaccccccagttttcatataaatatcatattag 62  Q
    |||||||||||||||||||||  ||| ||||| ||||||||||||    
T  43822944 caggtgccactgcaccccccaaattttatatatatatcatattag 43822900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 133; Significance: 4e-69; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 17 - 326
Target Start/End: Complemental strand, 43080220 - 43079916
Alignment:
Q  17 tcaggtgccactgcaccccccagttttcatataaatatcatattaggcaaaataatttagttaatacgttctgttcaagtggtaatgcgttctctcaacc 116  Q
    ||||||| ||||||||||||||||||  ||||| ||||||||||||||| | ||||| | |||||||||| ||||  ||||||||||| |||||||||||    
T  43080220 tcaggtgtcactgcaccccccagtttggatatagatatcatattaggcatattaattcaattaatacgttttgttgcagtggtaatgcattctctcaacc 43080121  T
Q  117 tattgcatgtctcgagttcgatccctccaacaccctcctttttaataattcttagcgaatttttgatattttattcnnnnnnntagccctggtgggattt 216  Q
     ||||| |||| ||||||||||||||||   || |||||||||||||||||||||||||||||| |||||||||||       |  |||| ||| |||||    
T  43080120 cattgcgtgtcccgagttcgatccctccggtactctcctttttaataattcttagcgaatttttcatattttattcaaaaaaatgaccctagtgagattt 43080021  T
Q  217 gaaccagcatcctccttgtaccaaccaaggatttgtacccctacaccaatttaccatgttgtacataatttgaaaacgtttaatatatatttcataaata 316  Q
     |||||||||||||| ||||     |||| ||||||||| |||||| | ||||| |||||| |||| |||| ||||||||||||||||||||||||||||    
T  43080020 aaaccagcatcctccatgta-----caagcatttgtaccactacactagtttactatgttgcacattatttaaaaacgtttaatatatatttcataaata 43079926  T
Q  317 tttggcaccc 326  Q
    ||||||||||    
T  43079925 tttggcaccc 43079916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 8 - 144
Target Start/End: Complemental strand, 21809352 - 21809217
Alignment:
Q  8 tggacatcatcaggtgccactgcaccccccagttttcatataaatatcatattaggcaaaataatttagttaatacgttctgttcaagtggtaatgcgtt 107  Q
    |||| ||| |||||||||||||||||||| |||||| ||||||||||||||||||||| | ||||| |||||||||||||||||  ||||||||||||||    
T  21809352 tggagatcctcaggtgccactgcaccccc-agttttgatataaatatcatattaggcatattaattcagttaatacgttctgttgcagtggtaatgcgtt 21809254  T
Q  108 ctctcaacctattgcatgtctcgagttcgatccctcc 144  Q
    ||||||| | ||||| | || ||||||||||||||||    
T  21809253 ctctcaatccattgcgtatcccgagttcgatccctcc 21809217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 257 - 308
Target Start/End: Complemental strand, 21809208 - 21809157
Alignment:
Q  257 ctacaccaatttaccatgttgtacataatttgaaaacgtttaatatatattt 308  Q
    |||||||| ||||| ||||||||||| |||||||||||||||||| ||||||    
T  21809208 ctacaccagtttactatgttgtacattatttgaaaacgtttaataaatattt 21809157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 22 - 61
Target Start/End: Complemental strand, 1076110 - 1076071
Alignment:
Q  22 tgccactgcaccccccagttttcatataaatatcatatta 61  Q
    |||||||||||||||||||||| |||||||| ||||||||    
T  1076110 tgccactgcaccccccagtttttatataaatttcatatta 1076071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 26942280 - 26942323
Alignment:
Q  18 caggtgccactgcaccccccagttttcatataaatatcatatta 61  Q
    |||||||||||||||| |||||||| ||||||||| ||||||||    
T  26942280 caggtgccactgcacctcccagtttgcatataaatttcatatta 26942323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 44970097 - 44970140
Alignment:
Q  18 caggtgccactgcaccccccagttttcatataaatatcatatta 61  Q
    |||||||||||||||||||||||||  |||||||| ||||||||    
T  44970097 caggtgccactgcaccccccagtttatatataaatttcatatta 44970140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 294 - 331
Target Start/End: Complemental strand, 1075840 - 1075803
Alignment:
Q  294 gtttaatatatatttcataaatatttggcacccccgaa 331  Q
    |||||||||||||||  |||||||||||||||||||||    
T  1075840 gtttaatatatattttttaaatatttggcacccccgaa 1075803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 126; Significance: 6e-65; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 17 - 239
Target Start/End: Complemental strand, 8823639 - 8823417
Alignment:
Q  17 tcaggtgccactgcaccccccagttttcatataaatatcatattaggcaaaataatttagttaatacgttctgttcaagtggtaatgcgttctctcaacc 116  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||| | |  |||||||||||| |||||||  |||||||||||||||||||||||    
T  8823639 tcaggtgccactgcaccccccagttttgatataaatatcatattaggcatattggtttagttaatacattctgttgcagtggtaatgcgttctctcaacc 8823540  T
Q  117 tattgcatgtctcgagttcgatccctccaacaccctcctttttaataattcttagcgaatttttgatattttattcnnnnnnntagccctggtgggattt 216  Q
     ||||| |||| ||||||||||||||||  |||| |||||||||||| |||||||||||||||| |||||||||||       | |||||  ||||||||    
T  8823539 cattgcgtgtcccgagttcgatccctccggcaccttcctttttaatatttcttagcgaatttttcatattttattcaaaaaaatggccctaatgggattt 8823440  T
Q  217 gaaccagcatcctccttgtacca 239  Q
    |||||||||||||||||||||||    
T  8823439 gaaccagcatcctccttgtacca 8823417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 208 - 330
Target Start/End: Complemental strand, 49084000 - 49083878
Alignment:
Q  208 gtgggatttgaaccagcatcctccttgtaccaaccaaggatttgtacccctacaccaatttaccatgttgtacataatttgaaaacgtttaatatatatt 307  Q
    |||||||||||||||||||||||||||||||||||||  |||| |||  |||||||| ||||| |||||| | || ||||||||||||||||||||||||    
T  49084000 gtgggatttgaaccagcatcctccttgtaccaaccaaacatttatactactacaccattttactatgttgaatattatttgaaaacgtttaatatatatt 49083901  T
Q  308 tcataaatatttggcacccccga 330  Q
    |||||||||||||||| ||||||    
T  49083900 tcataaatatttggcatccccga 49083878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 272 - 327
Target Start/End: Complemental strand, 8823402 - 8823349
Alignment:
Q  272 atgttgtacataatttgaaaacgtttaatatatatttcataaatatttggcacccc 327  Q
    ||||||||| | ||||||||||||||||  |||| |||||||||||||||||||||    
T  8823402 atgttgtactttatttgaaaacgtttaa--tatacttcataaatatttggcacccc 8823349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 295 - 330
Target Start/End: Complemental strand, 35187392 - 35187357
Alignment:
Q  295 tttaatatatatttcataaatatttggcacccccga 330  Q
    ||||||||||||| ||||||||||||||||||||||    
T  35187392 tttaatatatattccataaatatttggcacccccga 35187357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 326
Target Start/End: Complemental strand, 5232352 - 5232311
Alignment:
Q  285 tttgaaaacgtttaatatatatttcataaatatttggcaccc 326  Q
    |||||||  |||||||||||||| ||||||||||||||||||    
T  5232352 tttgaaactgtttaatatatattccataaatatttggcaccc 5232311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 65
Target Start/End: Complemental strand, 27993762 - 27993722
Alignment:
Q  25 cactgcaccccccagttttcatataaatatcatattaggca 65  Q
    ||||||||||||||  ||| |||||||||||||||||||||    
T  27993762 cactgcaccccccaacttttatataaatatcatattaggca 27993722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 99; Significance: 8e-49; HSPs: 2)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 152 - 330
Target Start/End: Complemental strand, 47433 - 47254
Alignment:
Q  152 tcctttttaataattcttagcgaatttttgatattttattcnnnnnnn-tagccctggtgggatttgaaccagcatcctccttgtaccaaccaaggattt 250  Q
    ||||||||||||||||||||||||||||| || ||||||||        | ||||| |||||| ||||||||||||||||||||||| ||||||| ||||    
T  47433 tcctttttaataattcttagcgaatttttcattttttattcaaaaaaaatggccctagtgggagttgaaccagcatcctccttgtactaaccaagcattt 47334  T
Q  251 gtacccctacaccaatttaccatgttgtacataatttgaaaacgtttaatatatatttcataaatatttggcacccccga 330  Q
    ||||| |||||| | ||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  47333 gtaccactacactagtttactatggtgtacattatttgaaaacgtttaatatatatttcataaatatttggcacccccga 47254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 19 - 192
Target Start/End: Complemental strand, 47630 - 47457
Alignment:
Q  19 aggtgccactgcaccccccagttttcatataaatatcatattaggcaaaataatttagttaatacgttctgttcaagtggtaatgcgttctctcaaccta 118  Q
    ||||||||||||||||| ||||||| ||||||||||| ||||||||| | ||||  || ||||| ||||||||  |||||||||||||||||||||||||    
T  47630 aggtgccactgcacccctcagttttgatataaatatcgtattaggcatattaatacagataatatgttctgttgcagtggtaatgcgttctctcaaccta 47531  T
Q  119 ttgcatgtctcgagttcgatccctccaacaccctcctttttaataattcttagcgaatttttgatattttattc 192  Q
    |||| ||| |||||||||||||||||  || ||||||||||||||||||||| ||||||||| || ||||||||    
T  47530 ttgcgtgtttcgagttcgatccctccggcagcctcctttttaataattcttaacgaatttttcattttttattc 47457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 6e-22; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 18 - 192
Target Start/End: Complemental strand, 14028345 - 14028167
Alignment:
Q  18 caggtgccactgcaccccccagttttcatataaatatcatattaggcaaaataatttagttaatacgttctgttcaagtggtaat----gcgttctctca 113  Q
    ||||||| |||||||||||||||||| |||||||||||||||||||||  |||  |||  |||||  || ||||  | |||| ||    |||||||||||    
T  14028345 caggtgcaactgcaccccccagttttaatataaatatcatattaggcatgataggttaagtaatatattgtgttgcattggttatatatgcgttctctca 14028246  T
Q  114 acctattgcatgtctcgagttcgatccctccaacaccctcctttttaataattcttagcgaatttttgatattttattc 192  Q
    | | |||  ||||| |||||| ||||||||  |||||||  ||||||||||||||||| |||||||| |||||||||||    
T  14028245 atccattttatgtcccgagtttgatccctctgacaccctattttttaataattcttagtgaatttttcatattttattc 14028167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 213 - 330
Target Start/End: Complemental strand, 16967238 - 16967121
Alignment:
Q  213 atttgaaccagcatcctccttgtaccaaccaaggatttgtacccctacaccaatttaccatgttgtacataatttgaaaacgtttaatatatatttcata 312  Q
    ||||||||||||||||||| |||  ||| |||| | ||||||  |||||||| ||||| ||  | || ||  ||||||| |||||||||||||||  | |    
T  16967238 atttgaaccagcatcctccatgttacaatcaagcaattgtacgactacaccagtttactatactatatattttttgaaaccgtttaatatatattcaaca 16967139  T
Q  313 aatatttggcacccccga 330  Q
    ||||||||||||| ||||    
T  16967138 aatatttggcacctccga 16967121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 18 - 65
Target Start/End: Complemental strand, 28480763 - 28480716
Alignment:
Q  18 caggtgccactgcaccccccagttttcatataaatatcatattaggca 65  Q
    |||||||||||||||| ||||  ||| |||||||||||||||||||||    
T  28480763 caggtgccactgcacctcccaacttttatataaatatcatattaggca 28480716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 61
Target Start/End: Complemental strand, 4428928 - 4428886
Alignment:
Q  19 aggtgccactgcaccccccagttttcatataaatatcatatta 61  Q
    ||||||||||||||||||||| ||| |||||||| ||||||||    
T  4428928 aggtgccactgcaccccccagattttatataaatttcatatta 4428886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 262 - 328
Target Start/End: Complemental strand, 14028114 - 14028048
Alignment:
Q  262 ccaatttaccatgttgtacataatttgaaaacgtttaatatatatttcataaatatttggcaccccc 328  Q
    ||||||||| || ||||| ||  || |||| ||||||||||||| |||||||||||||| |||||||    
T  14028114 ccaatttactatattgtatattcttggaaaccgtttaatatataattcataaatatttgacaccccc 14028048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 37101867 - 37101799
Alignment:
Q  18 caggtgccactgcaccccccagttttcatataaatatcatattaggcaaaataatttagttaatacgtt 86  Q
    ||||||||||||||||||| | |||| |||||||| ||||||||  ||  |||||| | ||||||||||    
T  37101867 caggtgccactgcaccccctaatttttatataaatttcatattatacatgataattcaattaatacgtt 37101799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 65
Target Start/End: Complemental strand, 29968752 - 29968705
Alignment:
Q  18 caggtgccactgcaccccccagttttcatataaatatcatattaggca 65  Q
    |||||||||||||||||||||  ||| |||||||||||||||||||||    
T  29968752 caggtgccactgcaccccccaacttttatataaatatcatattaggca 29968705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 22 - 61
Target Start/End: Original strand, 3419020 - 3419059
Alignment:
Q  22 tgccactgcaccccccagttttcatataaatatcatatta 61  Q
    |||||||||||||||||||||| |||||||| ||||||||    
T  3419020 tgccactgcaccccccagtttttatataaatttcatatta 3419059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0648 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0648
Description:

Target: scaffold0648; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 4624 - 4572
Alignment:
Q  18 caggtgccactgcaccccccagttttcatataaatatcatattaggcaaaata 70  Q
    |||||||||||||||||||||   || ||||||||||||||||||||| ||||    
T  4624 caggtgccactgcaccccccaacatttatataaatatcatattaggcataata 4572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0274 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0274
Description:

Target: scaffold0274; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 4094 - 4042
Alignment:
Q  18 caggtgccactgcaccccccagttttcatataaatatcatattaggcaaaata 70  Q
    |||||||||||||||||||||   || ||||||||||||||||||||| ||||    
T  4094 caggtgccactgcaccccccaacatttatataaatatcatattaggcataata 4042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 4198227 - 4198270
Alignment:
Q  18 caggtgccactgcaccccccagttttcatataaatatcatatta 61  Q
    |||||||||||||||||||||| ||| |||||||| ||||||||    
T  4198227 caggtgccactgcaccccccaggttttatataaatttcatatta 4198270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 18 - 61
Target Start/End: Complemental strand, 36565821 - 36565778
Alignment:
Q  18 caggtgccactgcaccccccagttttcatataaatatcatatta 61  Q
    |||||||||||||||||||||| ||| |||||||| ||||||||    
T  36565821 caggtgccactgcaccccccagattttatataaatttcatatta 36565778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 259 - 329
Target Start/End: Complemental strand, 25160551 - 25160481
Alignment:
Q  259 acaccaatttaccatgttgtacataatttgaaaacgtttaatatatatttcataaatatttggcacccccg 329  Q
    |||||||||||| || ||||| ||  |||||||   ||||||||||||| || ||||||||||||||||||    
T  25160551 acaccaatttacaatattgtatattgtttgaaatgttttaatatatattccacaaatatttggcacccccg 25160481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 65
Target Start/End: Complemental strand, 25160682 - 25160637
Alignment:
Q  19 aggtgccactgcaccccccagttttcatataaatatcatattaggca 65  Q
    |||||||||||||||||| | |||| |||||||||||||||||||||    
T  25160682 aggtgccactgcacccccgactttt-atataaatatcatattaggca 25160637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 285 - 325
Target Start/End: Original strand, 49289933 - 49289973
Alignment:
Q  285 tttgaaaacgtttaatatatatttcataaatatttggcacc 325  Q
    ||||||| | |||||||||||||||||| ||||||||||||    
T  49289933 tttgaaaccatttaatatatatttcatatatatttggcacc 49289973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 285 - 327
Target Start/End: Complemental strand, 19779784 - 19779742
Alignment:
Q  285 tttgaaaacgtttaatatatatttcataaatatttggcacccc 327  Q
    |||||||  |||| |||||||||||||||||||||||||||||    
T  19779784 tttgaaactgtttgatatatatttcataaatatttggcacccc 19779742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 19779900 - 19779868
Alignment:
Q  18 caggtgccactgcaccccccagttttcatataa 50  Q
    ||||||||||||||||||||||||||| |||||    
T  19779900 caggtgccactgcaccccccagttttcctataa 19779868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 145 - 191
Target Start/End: Original strand, 43410267 - 43410312
Alignment:
Q  145 aacaccctcctttttaataattcttagcgaatttttgatattttatt 191  Q
    |||||||||||||||| |||||||||||||||||||  |||||||||    
T  43410267 aacaccctccttttta-taattcttagcgaatttttcttattttatt 43410312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 61
Target Start/End: Original strand, 47099852 - 47099890
Alignment:
Q  23 gccactgcaccccccagttttcatataaatatcatatta 61  Q
    ||||||||||||||||||||| |||||||| ||||||||    
T  47099852 gccactgcaccccccagtttttatataaatttcatatta 47099890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 294 - 331
Target Start/End: Original strand, 47100123 - 47100160
Alignment:
Q  294 gtttaatatatatttcataaatatttggcacccccgaa 331  Q
    |||||||||||||||  |||||||||||||||||||||    
T  47100123 gtttaatatatattttttaaatatttggcacccccgaa 47100160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 8541123 - 8541167
Alignment:
Q  18 caggtgccactgcaccccccagttttcatataaatatcatattag 62  Q
    |||||||||||||||||||||   || ||||||||||||||||||    
T  8541123 caggtgccactgcaccccccaacatttatataaatatcatattag 8541167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 61
Target Start/End: Original strand, 25644602 - 25644646
Alignment:
Q  17 tcaggtgccactgcaccccccagttttcatataaatatcatatta 61  Q
    |||| ||||| |||||||||||||||| |||||||| ||||||||    
T  25644602 tcagatgccattgcaccccccagttttaatataaatttcatatta 25644646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 47278382 - 47278331
Alignment:
Q  18 caggtgccactgcaccccccagttttcatataaatatcatattaggcaaaata 70  Q
    ||||||||||||||||||| |  ||| ||||||||||||||||||||| ||||    
T  47278382 caggtgccactgcacccccaatattt-atataaatatcatattaggcataata 47278331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University