View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18532_high_26 (Length: 308)
Name: NF18532_high_26
Description: NF18532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18532_high_26 |
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Alignment Details
Target: chr1 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 708540 - 708249
Alignment:
| Q |
1 |
ccattatcatgatcatcaacaacaaccccatttcttattccaccattcttttcaacagaactactcgaattcctgcttttgtaatactcatgatgccttt |
100 |
Q |
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| T |
708540 |
ccattatcatgatcatcaacaacaaccccatttcttattccaccattcttttcaacaaaactactcgaattcctgcttttgtaatactcatgatgccttt |
708441 |
T |
|
| Q |
101 |
cacattgggttttttcaggtaaagcttgctctttgcacctccatccacctgaccctgttctactgcacctcctagactcgtcatcaccagtttcatccat |
200 |
Q |
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|||| ||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
708440 |
cacaatgggtttttccaggtaaagcttgctctttgcacctccatccacctgacccgtttctactgcacctcctagactcgtcatcaccagtttcatccat |
708341 |
T |
|
| Q |
201 |
tgaaaaaactaaatttgagaagtgggttttgagtgaaaaatgtaagagtatgaattttttaactaagaatgaattatggatagtgaaatttg |
292 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
708340 |
tgaaaaaactaaatttgagaagtgggttttgagtgaaaaatgtaaaagtatgaattttttaactatgaatgaattatggatagtgaaatttg |
708249 |
T |
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