View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18532_high_3 (Length: 669)

Name: NF18532_high_3
Description: NF18532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18532_high_3
NF18532_high_3
[»] chr3 (5 HSPs)
chr3 (1-661)||(44477930-44478590)
chr3 (235-505)||(34584692-34584962)
chr3 (7-94)||(46240524-46240611)
chr3 (54-94)||(30037975-30038015)
chr3 (1-115)||(34585080-34585194)
[»] chr5 (2 HSPs)
chr5 (1-661)||(21975588-21976248)
chr5 (15-94)||(29878555-29878634)
[»] chr7 (8 HSPs)
chr7 (333-552)||(47735013-47735232)
chr7 (1-114)||(14798524-14798637)
chr7 (1-114)||(15245516-15245629)
chr7 (1-114)||(14632754-14632867)
chr7 (258-460)||(13048059-13048261)
chr7 (8-130)||(47735430-47735552)
chr7 (240-460)||(34797383-34797603)
chr7 (239-319)||(37875643-37875723)
[»] chr4 (5 HSPs)
chr4 (333-552)||(35598474-35598693)
chr4 (12-100)||(4497002-4497090)
chr4 (237-307)||(17323260-17323330)
chr4 (12-94)||(6869379-6869461)
chr4 (7-87)||(17323519-17323599)
[»] chr8 (7 HSPs)
chr8 (333-634)||(41771489-41771790)
chr8 (237-319)||(1379763-1379845)
chr8 (15-94)||(3920974-3921053)
chr8 (234-391)||(17130025-17130182)
chr8 (7-87)||(1379532-1379612)
chr8 (7-87)||(1381846-1381926)
chr8 (8-87)||(41771168-41771247)
[»] chr2 (4 HSPs)
chr2 (238-552)||(13649870-13650181)
chr2 (8-130)||(13649642-13649764)
chr2 (239-391)||(20653593-20653745)
chr2 (9-109)||(22056668-22056768)
[»] chr6 (3 HSPs)
chr6 (240-460)||(22370815-22371035)
chr6 (27-100)||(24675825-24675898)
chr6 (9-109)||(19395874-19395974)
[»] chr1 (4 HSPs)
chr1 (2-114)||(26268773-26268885)
chr1 (9-109)||(31812335-31812435)
chr1 (419-505)||(30964578-30964664)
chr1 (1-115)||(30964966-30965080)
[»] scaffold0300 (1 HSPs)
scaffold0300 (27-100)||(18433-18506)
[»] scaffold0129 (1 HSPs)
scaffold0129 (9-109)||(786-886)


Alignment Details
Target: chr3 (Bit Score: 597; Significance: 0; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 597; E-Value: 0
Query Start/End: Original strand, 1 - 661
Target Start/End: Complemental strand, 44478590 - 44477930
Alignment:
Q  1 cttgggaatatgttgcctttgctgctcccatcatcaagtctctaatcaaggtccctcctccaaacttcttcttgaagttagcatataaatgtctgaaaca 100  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  44478590 cttggaaatatgttgcctttgctgctcccatcatcaagtctctaatcaaggtccctcctccaaacttcttcttgaagttagcatataaatgtctcaaaca 44478491  T
Q  101 cagcctatgttcaaccctgtcagaccattcttctaaaactggaatcaatccctagagtacacacatagcaaaacaaaacataagtacacagagcaaaaca 200  Q
    || ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| ||||    
T  44478490 caacctatgttcaagcctgtcagaccattcttctaaaactggaatcaatccctagagtacacacatagcaaaagaaaacataagtacacacagcataaca 44478391  T
Q  201 taacataagtacaaattagtctcaaaacataaattatttaccttttgttggtctgatataaagacccatctcctatcagtgccaatatcattaagtagca 300  Q
     |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||    
T  44478390 aaacataagtacaaattagtctcaaaacataaactatttaccttttgttggtctgttataaagacccatctcctgtcagtgccaatatcattaagtagca 44478291  T
Q  301 atgtcaagaaccatctccaagcatcattagtctcattctcaaccactccaaaagccaatgggtaatactgatcatttgcatctcttccaacagcaaccag 400  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44478290 atgtcaagaaccatctccaagcttcattagtctcattctcaaccactccaaaagccaatgggtaatactgatcatttgcatctcttccaacagcaaccag 44478191  T
Q  401 tagtattcctccatacattgttttcagatggcatccatccactccaatgaaaggcctacatccactcaaaaatccttttttacaaccttcaaagcagaaa 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  44478190 tagtattcctccatacattgttttcagatggcatccatccactccaatgaaaggcctacatccactcaaaaatccttttttacaaccttcaaaacagaaa 44478091  T
Q  501 taaaacttgttgaaccttggttgatttgttaacagtgttctctccacattaattttgagggtatttcccaatgaaactctgtgcaactcagcagcatacc 600  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  44478090 taaaacttgttgaaccttggttgatttgttaacagtgttctctccacattaatcttgagggtatttcccaatgaaactctgtgcaactcagcagcatacc 44477991  T
Q  601 tccaaagcagagtatattgtttcttagcatcaccttcaatgatttcttttgccatattctt 661  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||    
T  44477990 tccaaagcagagtatattgtttcttagcatcaccttcaatgatttctttagccattttctt 44477930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 235 - 505
Target Start/End: Complemental strand, 34584962 - 34584692
Alignment:
Q  235 tatttaccttttgttggtctgatataaagacccatctcctatcagtgccaatatcattaagtagcaatgtcaagaaccatctccaagcatcattagtctc 334  Q
    |||||||||||||||| || |||||||| ||||||||| | ||||| |||||||| |  ||||  |  || || ||||| ||||| |  ||| || ||||    
T  34584962 tatttaccttttgttgatcagatataaatacccatctcttctcagttccaatatcctctagtaaaagagttaaaaaccacctccatgattcagtattctc 34584863  T
Q  335 attctcaaccactccaaaagccaatgggtaatactgatcatttgcatctcttccaacagcaaccagtagtattcctccatacattgttttcagatggcat 434  Q
    |   ||||| | ||||||||| |  || ||||| || ||||| ||||||||||| ||||| | ||| |||   || |||||   |||||||| ||| |||    
T  34584862 aacttcaacaattccaaaagcaagaggataatattggtcattagcatctcttcccacagctatcagaagttgcccgccatattgtgttttcaaatgacat 34584763  T
Q  435 ccatccactccaatgaaaggcctacatccactcaaaaatccttttttacaaccttcaaagcagaaataaaa 505  Q
    ||||| || || ||||| || ||||| ||| |||| || |||| |||||||||||||||||| ||||||||    
T  34584762 ccatctacacctatgaagggtctacaaccattcaagaacccttgtttacaaccttcaaagcaaaaataaaa 34584692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 7 - 94
Target Start/End: Complemental strand, 46240611 - 46240524
Alignment:
Q  7 aatatgttgcctttgctgctcccatcatcaagtctctaatcaaggtccctcctccaaacttcttcttgaagttagcatataaatgtct 94  Q
    ||||||| || || || ||||||||||||||||| || || |  || ||||| ||||| |||||||||||||||||||| ||||||||    
T  46240611 aatatgtagctttagcagctcccatcatcaagtcccttataagagtacctccaccaaatttcttcttgaagttagcatacaaatgtct 46240524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 54 - 94
Target Start/End: Original strand, 30037975 - 30038015
Alignment:
Q  54 cctcctccaaacttcttcttgaagttagcatataaatgtct 94  Q
    ||||||||||||||||||||||| |||||||| ||||||||    
T  30037975 cctcctccaaacttcttcttgaaattagcatacaaatgtct 30038015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 34585194 - 34585080
Alignment:
Q  1 cttgggaatatgttgcctttgctgctcccatcatcaagtctctaatcaaggtccctcctccaaacttcttcttgaagttagcatataaatgtctgaaaca 100  Q
    ||||| |||| |||||||| | ||| ||||||||||||||||||||    | |||||||||||| || ||||| || || ||||| || || |||| |||    
T  34585194 cttggtaataagttgccttggatgcccccatcatcaagtctctaattgctgaccctcctccaaattttttcttaaaatttgcatacaagtgcctgagaca 34585095  T
Q  101 cagcctatgttcaac 115  Q
     || |||||||||||    
T  34585094 aagtctatgttcaac 34585080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 589; Significance: 0; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 589; E-Value: 0
Query Start/End: Original strand, 1 - 661
Target Start/End: Original strand, 21975588 - 21976248
Alignment:
Q  1 cttgggaatatgttgcctttgctgctcccatcatcaagtctctaatcaaggtccctcctccaaacttcttcttgaagttagcatataaatgtctgaaaca 100  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  21975588 cttggaaatatgttgcctttgctgctcccatcatcaagtctctaatcaaggtccctcctccaaacttcttcttgaagttagcatataaatgtctcaaaca 21975687  T
Q  101 cagcctatgttcaaccctgtcagaccattcttctaaaactggaatcaatccctagagtacacacatagcaaaacaaaacataagtacacagagcaaaaca 200  Q
    |||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| ||||    
T  21975688 cagcctatgttcaagcctgccagaccattcttctaaaactggaatcaatccctagagtacacacatagcaaaagaaaacataagtacacacagcataaca 21975787  T
Q  201 taacataagtacaaattagtctcaaaacataaattatttaccttttgttggtctgatataaagacccatctcctatcagtgccaatatcattaagtagca 300  Q
     |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||    
T  21975788 aaacataagtacaaattagtctcaaaacataaactatttaccttttgttggtctgttataaagacccatctcctgtcagtgccaatatcattaagtagca 21975887  T
Q  301 atgtcaagaaccatctccaagcatcattagtctcattctcaaccactccaaaagccaatgggtaatactgatcatttgcatctcttccaacagcaaccag 400  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  21975888 atgtcaagaaccatctccaagcttcattagtctcattctcaaccactccaaaagccaatgggtaatactgatcatttgcatctcttccaacaacaaccag 21975987  T
Q  401 tagtattcctccatacattgttttcagatggcatccatccactccaatgaaaggcctacatccactcaaaaatccttttttacaaccttcaaagcagaaa 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  21975988 tagtattcctccatacattgttttcagatggcatccatccactccaatgaaaggcctacatccactcaaaaatccttttttacaaccttcaaaacagaaa 21976087  T
Q  501 taaaacttgttgaaccttggttgatttgttaacagtgttctctccacattaattttgagggtatttcccaatgaaactctgtgcaactcagcagcatacc 600  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||    
T  21976088 taaaacttgttgaaccttggttgatttgttaacagtgttctctccacattaatcttgagggtatttcccaatgaaactctgtgcaactcagcagtatacc 21976187  T
Q  601 tccaaagcagagtatattgtttcttagcatcaccttcaatgatttcttttgccatattctt 661  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||    
T  21976188 tccaaagcagagtatattgtttcttagcatcaccttcaatgatttctttagccattttctt 21976248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 15 - 94
Target Start/End: Complemental strand, 29878634 - 29878555
Alignment:
Q  15 gcctttgctgctcccatcatcaagtctctaatcaaggtccctcctccaaacttcttcttgaagttagcatataaatgtct 94  Q
    |||||||| |||||||||||||| ||||| ||     | ||||||||||||||||||||||| |||||||| ||||||||    
T  29878634 gcctttgcagctcccatcatcaaatctcttatttgactgcctcctccaaacttcttcttgaaattagcatacaaatgtct 29878555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 72; Significance: 2e-32; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 333 - 552
Target Start/End: Complemental strand, 47735232 - 47735013
Alignment:
Q  333 tcattctcaaccactccaaaagccaatgggtaatactgatcatttgcatctcttccaacagcaaccagtagtattcctccatacattgttttcagatggc 432  Q
    ||||||||||| |||||||| || |||||| |||| || ||||||||||||||||||||| |||| | || ||| |||||| || | |||||||  || |    
T  47735232 tcattctcaacaactccaaatgctaatgggaaatattggtcatttgcatctcttccaacatcaactaataatatacctccaaacttagttttcaagtgac 47735133  T
Q  433 atccatccactccaatgaaaggcctacatccactcaaaaatccttttttacaaccttcaaagcagaaataaaacttgttgaaccttggttgatttgttaa 532  Q
    | |||||||||||||| || |||||||| |||  |||||| ||||  || ||||| ||||| || || ||||||||| |||| ||||||||||||||||     
T  47735132 acccatccactccaataaatggcctacaaccagccaaaaaaccttgcttgcaaccatcaaaacaaaagtaaaacttgctgaatcttggttgatttgttat 47735033  T
Q  533 cagtgttctctccacattaa 552  Q
    ||  |||||||| |||||||    
T  47735032 caaggttctctcaacattaa 47735013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 14798524 - 14798637
Alignment:
Q  1 cttgggaatatgttgcctttgctgctcccatcatcaagtctctaatcaaggtccctcctccaaacttcttcttgaagttagcatataaatgtctgaaaca 100  Q
    ||||| ||||||| | ||| || || ||||||||||||||||||||||| || |||||||||||||||||||| || |||||||| ||||| || || ||    
T  14798524 cttggtaatatgtagtcttggcagcacccatcatcaagtctctaatcaatgttcctcctccaaacttcttcttaaaattagcatacaaatgccttaagca 14798623  T
Q  101 cagcctatgttcaa 114  Q
    || |||||| ||||    
T  14798624 caacctatggtcaa 14798637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 15245516 - 15245629
Alignment:
Q  1 cttgggaatatgttgcctttgctgctcccatcatcaagtctctaatcaaggtccctcctccaaacttcttcttgaagttagcatataaatgtctgaaaca 100  Q
    ||||| ||||||| | ||| || || ||||||||||||||||||||||| || |||||||||||||||||||| || |||||||| ||||| || || ||    
T  15245516 cttggtaatatgtagtcttggcagcacccatcatcaagtctctaatcaatgttcctcctccaaacttcttcttaaaattagcatacaaatgccttaagca 15245615  T
Q  101 cagcctatgttcaa 114  Q
    || |||||| ||||    
T  15245616 caacctatggtcaa 15245629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 14632867 - 14632754
Alignment:
Q  1 cttgggaatatgttgcctttgctgctcccatcatcaagtctctaatcaaggtccctcctccaaacttcttcttgaagttagcatataaatgtctgaaaca 100  Q
    ||||| ||||||| |||||  | || ||||||||||||||||||||||| || |||||||||||||||||||| || ||| |||| ||||| || || ||    
T  14632867 cttggtaatatgtagccttgacagcacccatcatcaagtctctaatcaatgttcctcctccaaacttcttcttaaaattatcatacaaatgccttaagca 14632768  T
Q  101 cagcctatgttcaa 114  Q
    || |||||| ||||    
T  14632767 caacctatggtcaa 14632754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 258 - 460
Target Start/End: Original strand, 13048059 - 13048261
Alignment:
Q  258 ataaagacccatctcctatcagtgccaatatcattaagtagcaatgtcaagaaccatctccaagcatcattagtctcattctcaaccactccaaaagcca 357  Q
    ||||| ||||||||||| | ||| |||||||| | ||| || || || | |||||| ||||||| ||   | |||||| |||| || |||||||||||||    
T  13048059 ataaacacccatctcctgttagttccaatatcttcaagcagtaaggtaaggaaccacctccaagaatatgttgtctcagtctctacaactccaaaagcca 13048158  T
Q  358 atgggtaatactgatcatttgcatctcttccaacagcaaccagtagtattcctccatacattgttttcagatggcatccatccactccaatgaaaggcct 457  Q
      ||| | || || |||||||||||||| ||||| ||||||| ||  || ||||||||    ||||||||||| || |||||||| || ||||| |||||    
T  13048159 gagggaagtattggtcatttgcatctctaccaactgcaaccaataaaatacctccatattgggttttcagatgacacccatccacccctatgaatggcct 13048258  T
Q  458 aca 460  Q
    |||    
T  13048259 aca 13048261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 130
Target Start/End: Complemental strand, 47735552 - 47735430
Alignment:
Q  8 atatgttgcctttgctgctcccatcatcaagtctctaatcaaggtccctcctccaaacttcttcttgaagttagcatataaatgtctgaaacacagccta 107  Q
    |||||| ||||||||||| ||||||||||| || || ||||| || ||||||||||| || |||||||| || ||||||| ||| || | |||   ||||    
T  47735552 atatgtagcctttgctgcacccatcatcaaatcccttatcaatgttcctcctccaaattttttcttgaaattggcatatagatgcctaagacagtaccta 47735453  T
Q  108 tgttcaaccctgtcagaccattc 130  Q
    |||||||  || |||||||||||    
T  47735452 tgttcaattctatcagaccattc 47735430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 240 - 460
Target Start/End: Original strand, 34797383 - 34797603
Alignment:
Q  240 accttttgttggtctgatataaagacccatctcctatcagtgccaatatcattaagtagcaatgtcaagaaccatctccaagcatcattagtctcattct 339  Q
    ||||||||||| || || ||||| ||||||||||||| ||| |||||||| | ||| || || || | |||||| ||||| | |||  | || ||| |||    
T  34797383 accttttgttgatcagaaataaatacccatctcctattagttccaatatcttcaagcagtaaggtaaggaaccacctccatgaatctgttgtttcagtct 34797482  T
Q  340 caaccactccaaaagccaatgggtaatactgatcatttgcatctcttccaacagcaaccagtagtattcctccatacattgttttcagatggcatccatc 439  Q
    | || |||||||||||||| ||  | || || |||||||||||||| ||||| ||||||| ||  || |||||| |    ||||||||||| || |||||    
T  34797483 ctacaactccaaaagccaaaggaaagtattggtcatttgcatctctaccaactgcaaccaataaaatacctccaaattgggttttcagatgacacccatc 34797582  T
Q  440 cactccaatgaaaggcctaca 460  Q
    ||| || ||||| | ||||||    
T  34797583 cacccctatgaatgacctaca 34797603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 239 - 319
Target Start/End: Complemental strand, 37875723 - 37875643
Alignment:
Q  239 taccttttgttggtctgatataaagacccatctcctatcagtgccaatatcattaagtagcaatgtcaagaaccatctcca 319  Q
    |||||||||||| ||||| || || |||||| |||| ||||| || ||||| | ||||| || ||| ||||||||||||||    
T  37875723 taccttttgttgatctgaaatgaaaacccatttcctctcagtccctatatcttcaagtaacagtgttaagaaccatctcca 37875643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 72; Significance: 2e-32; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 333 - 552
Target Start/End: Complemental strand, 35598693 - 35598474
Alignment:
Q  333 tcattctcaaccactccaaaagccaatgggtaatactgatcatttgcatctcttccaacagcaaccagtagtattcctccatacattgttttcagatggc 432  Q
    ||||||||||| |||||||| || |||||| |||| || ||||||||||||||||||||| |||| | || ||| |||||| || | |||||||  || |    
T  35598693 tcattctcaacaactccaaatgctaatgggaaatattggtcatttgcatctcttccaacatcaactaataatatacctccaaacttagttttcaagtgac 35598594  T
Q  433 atccatccactccaatgaaaggcctacatccactcaaaaatccttttttacaaccttcaaagcagaaataaaacttgttgaaccttggttgatttgttaa 532  Q
    | |||||||||||||| || |||||||| |||  |||||| ||||  || ||||| ||||| || || ||||||||| |||| ||| |||||||||||||    
T  35598593 acccatccactccaataaatggcctacaaccagccaaaaaaccttgcttgcaaccatcaaaacaaaagtaaaacttgctgaatctttgttgatttgttaa 35598494  T
Q  533 cagtgttctctccacattaa 552  Q
    ||  |||||||| |||||||    
T  35598493 caaggttctctcaacattaa 35598474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 12 - 100
Target Start/End: Original strand, 4497002 - 4497090
Alignment:
Q  12 gttgcctttgctgctcccatcatcaagtctctaatcaaggtccctcctccaaacttcttcttgaagttagcatataaatgtctgaaaca 100  Q
    ||||| ||||| || |||||||||| ||| || |||||||| || || ||||||||||| |||||||| |||||||||||||| |||||    
T  4497002 gttgcttttgcagcacccatcatcaggtcccttatcaaggttccaccaccaaacttctttttgaagtttgcatataaatgtcttaaaca 4497090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 237 - 307
Target Start/End: Complemental strand, 17323330 - 17323260
Alignment:
Q  237 tttaccttttgttggtctgatataaagacccatctcctatcagtgccaatatcattaagtagcaatgtcaa 307  Q
    |||||||||||||| ||||| ||||||||||||||| | ||||| |||||||||| ||||| ||| |||||    
T  17323330 tttaccttttgttgatctgaaataaagacccatctcttctcagtaccaatatcatcaagtaacaaggtcaa 17323260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 94
Target Start/End: Complemental strand, 6869461 - 6869379
Alignment:
Q  12 gttgcctttgctgctcccatcatcaagtctctaatcaaggtccctcctccaaacttcttcttgaagttagcatataaatgtct 94  Q
    ||||||||||| |||||||||||||| ||||| ||     | ||||||||||||||||||||||| || ||||| ||||||||    
T  6869461 gttgcctttgcagctcccatcatcaaatctcttatttgactgcctcctccaaacttcttcttgaaatttgcatacaaatgtct 6869379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 7 - 87
Target Start/End: Complemental strand, 17323599 - 17323519
Alignment:
Q  7 aatatgttgcctttgctgctcccatcatcaagtctctaatcaaggtccctcctccaaacttcttcttgaagttagcatata 87  Q
    |||||||||| || ||||| |||||||| |||||||||||    || |||||||||||||| ||||| ||||| |||||||    
T  17323599 aatatgttgctttggctgcccccatcattaagtctctaatagcagtacctcctccaaactttttcttaaagtttgcatata 17323519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 71; Significance: 8e-32; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 333 - 634
Target Start/End: Original strand, 41771489 - 41771790
Alignment:
Q  333 tcattctcaaccactccaaaagccaatgggtaatactgatcatttgcatctcttccaacagcaaccagtagtattcctccatacattgttttcagatggc 432  Q
    ||||||||||| |||||||| || |||||| |||| || ||||||||||||||||||||| |||| | || ||| |||||| || | |||||||  || |    
T  41771489 tcattctcaacaactccaaatgctaatgggaaatattggtcatttgcatctcttccaacatcaactaataatatacctccaaacttagttttcaagtgac 41771588  T
Q  433 atccatccactccaatgaaaggcctacatccactcaaaaatccttttttacaaccttcaaagcagaaataaaacttgttgaaccttggttgatttgttaa 532  Q
    | |||||||||||||| || |||||||| |||  |||||| ||||  || ||||| ||||| || || ||||||||| |||| ||||||||||| |||||    
T  41771589 acccatccactccaataaatggcctacagccagccaaaaaaccttgcttgcaaccatcaaaacaaaagtaaaacttgctgaatcttggttgattggttaa 41771688  T
Q  533 cagtgttctctccacattaattttgagggtatttcccaat-gaaactctgtgcaactcagcagcatacctccaaagcagagtatattgtttcttagcatc 631  Q
    ||  ||||| || |||||||  |||||  || |||||| |  | || || |  |||||||| ||||||||||| || ||||| ||||||||||| |||||    
T  41771689 caaagttctttcaacattaagcttgagatta-ttcccattacacaccctctttaactcagctgcatacctccatagtagagtgtattgtttctttgcatc 41771787  T
Q  632 acc 634  Q
    |||    
T  41771788 acc 41771790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 237 - 319
Target Start/End: Original strand, 1379763 - 1379845
Alignment:
Q  237 tttaccttttgttggtctgatataaagacccatctcctatcagtgccaatatcattaagtagcaatgtcaagaaccatctcca 319  Q
    |||||||||||||| ||||| ||||||||||||||| | ||||| |||||||||| ||||| ||  ||||| ||||| |||||    
T  1379763 tttaccttttgttgatctgaaataaagacccatctcttctcagtaccaatatcatcaagtaacagggtcaaaaaccacctcca 1379845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 15 - 94
Target Start/End: Original strand, 3920974 - 3921053
Alignment:
Q  15 gcctttgctgctcccatcatcaagtctctaatcaaggtccctcctccaaacttcttcttgaagttagcatataaatgtct 94  Q
    |||||||| |||||||||||||| ||||| ||     | ||||||||||||||||||||||| |||||||| ||||||||    
T  3920974 gcctttgcagctcccatcatcaaatctcttatttgactgcctcctccaaacttcttcttgaaattagcatacaaatgtct 3921053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 234 - 391
Target Start/End: Original strand, 17130025 - 17130182
Alignment:
Q  234 ttatttaccttttgttggtctgatataaagacccatctcctatcagtgccaatatcattaagtagcaatgtcaagaaccatctccaagcatcattagtct 333  Q
    |||| |||||||||||| || || || |||||||||||| ||||||| |||||||| | |||||  | ||| |  |||||||||||||  || ||| |||    
T  17130025 ttatgtaccttttgttgatcagagatgaagacccatctcttatcagttccaatatcttcaagtaaaagtgttagaaaccatctccaagattccttattct 17130124  T
Q  334 cattctcaaccactccaaaagccaatgggtaatactgatcatttgcatctcttccaac 391  Q
    |    ||||| || |||||||| || |||||||| || ||||||||||| || |||||    
T  17130125 ccacttcaactaccccaaaagctaaagggtaatattggtcatttgcatccctcccaac 17130182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 7 - 87
Target Start/End: Original strand, 1379532 - 1379612
Alignment:
Q  7 aatatgttgcctttgctgctcccatcatcaagtctctaatcaaggtccctcctccaaacttcttcttgaagttagcatata 87  Q
    |||||||||| || ||||| |||||||| |||||||||||    || |||||||||||||| ||||| ||||| |||||||    
T  1379532 aatatgttgctttggctgcccccatcattaagtctctaatagcagtacctcctccaaactttttcttaaagtttgcatata 1379612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 7 - 87
Target Start/End: Original strand, 1381846 - 1381926
Alignment:
Q  7 aatatgttgcctttgctgctcccatcatcaagtctctaatcaaggtccctcctccaaacttcttcttgaagttagcatata 87  Q
    |||||||||| || ||||| |||||||| |||||||||||    || |||||||||||||| ||||| ||||| |||||||    
T  1381846 aatatgttgctttggctgcccccatcattaagtctctaatagcagtacctcctccaaactttttcttaaagtttgcatata 1381926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 87
Target Start/End: Original strand, 41771168 - 41771247
Alignment:
Q  8 atatgttgcctttgctgctcccatcatcaagtctctaatcaaggtccctcctccaaacttcttcttgaagttagcatata 87  Q
    |||||| ||||||||||| | ||||||||| || || ||||| || ||||||||||| || |||||||| || |||||||    
T  41771168 atatgtagcctttgctgcactcatcatcaaatcccttatcaaagttcctcctccaaattttttcttgaaattggcatata 41771247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 8e-26; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 238 - 552
Target Start/End: Original strand, 13649870 - 13650181
Alignment:
Q  238 ttaccttttgttggtctgatataaagacccatctcctatcagtgccaatatcattaagtagcaatgtcaagaaccatctccaagcatcattagtctcatt 337  Q
    ||||||||||||| ||||| ||||| ||||||||  | |   | |||||||| | ||| || || || || ||||| |||||||  || || || |||||    
T  13649870 ttaccttttgttgatctgaaataaacacccatcttttgt---ttccaatatcttcaagcagtaaagttaaaaaccacctccaagtctctttggtttcatt 13649966  T
Q  338 ctcaaccactccaaaagccaatgggtaatactgatcatttgcatctcttccaacagcaaccagtagtattcctccatacattgttttcagatggcatcca 437  Q
    |||||| |||||||| || |||||| |||| || |||||||||||||||||||||||||| | || ||| | |||| || | |||||||  || || |||    
T  13649967 ctcaacaactccaaatgctaatgggaaatattggtcatttgcatctcttccaacagcaactaataatatacatccaaacttagttttcaagtgacaccca 13650066  T
Q  438 tccactccaatgaaaggcctacatccactcaaaaatccttttttacaaccttcaaagcagaaataaaacttgttgaaccttggttgatttgttaacagtg 537  Q
    ||||||||||| || |||||||| |||  |||||| ||||  || ||||| | |||  | || ||||||||| | || |||||||||||||||| ||  |    
T  13650067 tccactccaataaatggcctacagccagccaaaaaaccttgcttgcaaccataaaaaaaaaagtaaaacttgctaaatcttggttgatttgttatcaagg 13650166  T
Q  538 ttctctccacattaa 552  Q
    ||||||| |||||||    
T  13650167 ttctctcaacattaa 13650181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 130
Target Start/End: Original strand, 13649642 - 13649764
Alignment:
Q  8 atatgttgcctttgctgctcccatcatcaagtctctaatcaaggtccctcctccaaacttcttcttgaagttagcatataaatgtctgaaacacagccta 107  Q
    |||||| ||||||||||| ||||||||||| || || ||||| || ||||||||||| || |||||||| || ||||||| ||| || | |||   ||||    
T  13649642 atatgtagcctttgctgcacccatcatcaaatcccttatcaatgttcctcctccaaattttttcttgaaattggcatatagatgcctaagacagtaccta 13649741  T
Q  108 tgttcaaccctgtcagaccattc 130  Q
    |||||||  || |||||||||||    
T  13649742 tgttcaattctatcagaccattc 13649764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 239 - 391
Target Start/End: Complemental strand, 20653745 - 20653593
Alignment:
Q  239 taccttttgttggtctgatataaagacccatctcctatcagtgccaatatcattaagtagcaatgtcaagaaccatctccaagcatcattagtctcattc 338  Q
    |||||||||||| || || || |||||||||||| ||||||  |||||||| | ||||| || |||||  |||||||||||||  || ||| ||||        
T  20653745 taccttttgttgatcagagatgaagacccatctcttatcagctccaatatcttcaagtaacagtgtcagaaaccatctccaagattccttattctccact 20653646  T
Q  339 tcaaccactccaaaagccaatgggtaatactgatcatttgcatctcttccaac 391  Q
    ||||| || |||||||| || |||||||| || ||||||||||| || |||||    
T  20653645 tcaacaaccccaaaagctaaagggtaatattggtcatttgcatccctaccaac 20653593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 109
Target Start/End: Complemental strand, 22056768 - 22056668
Alignment:
Q  9 tatgttgcctttgctgctcccatcatcaagtctctaatcaaggtccctcctccaaacttcttcttgaagttagcatataaatgtctgaaacacagcctat 108  Q
    ||||| ||||| || ||||||||||| | ||||||||| |  || ||||||||||| ||||| ||||| || ||||||||||| || |||||||| ||||    
T  22056768 tatgtagccttagcagctcccatcataaggtctctaataagtgtacctcctccaaatttctttttgaaattggcatataaatgcctcaaacacagtctat 22056669  T
Q  109 g 109  Q
    |    
T  22056668 g 22056668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 2e-23; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 240 - 460
Target Start/End: Original strand, 22370815 - 22371035
Alignment:
Q  240 accttttgttggtctgatataaagacccatctcctatcagtgccaatatcattaagtagcaatgtcaagaaccatctccaagcatcattagtctcattct 339  Q
    |||||||||||||| || ||||| ||||||||||||| ||| |||||||| | ||| || || || | |||||| ||||||| |||  | |||||| |||    
T  22370815 accttttgttggtcagagataaatacccatctcctattagttccaatatcttcaagcagtaaggtaaggaaccacctccaagaatctgttgtctcagtct 22370914  T
Q  340 caaccactccaaaagccaatgggtaatactgatcatttgcatctcttccaacagcaaccagtagtattcctccatacattgttttcagatggcatccatc 439  Q
    | || |||||||||||||| ||| |||| || |||||||||||||| || || ||||||| ||  || ||||||||    ||||||| ||| || |||||    
T  22370915 ctacaactccaaaagccaaagggaaatattggtcatttgcatctctacccactgcaaccaataaaatacctccatattgggttttcaaatgacaaccatc 22371014  T
Q  440 cactccaatgaaaggcctaca 460  Q
    ||| || ||||| ||||||||    
T  22371015 cacccctatgaatggcctaca 22371035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 27 - 100
Target Start/End: Original strand, 24675825 - 24675898
Alignment:
Q  27 cccatcatcaagtctctaatcaaggtccctcctccaaacttcttcttgaagttagcatataaatgtctgaaaca 100  Q
    |||||||||| ||| || |||||||| || || ||||||||||||||| |||| |||||||||||||| |||||    
T  24675825 cccatcatcaggtcccttatcaaggttccaccaccaaacttcttcttgtagtttgcatataaatgtcttaaaca 24675898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 109
Target Start/End: Complemental strand, 19395974 - 19395874
Alignment:
Q  9 tatgttgcctttgctgctcccatcatcaagtctctaatcaaggtccctcctccaaacttcttcttgaagttagcatataaatgtctgaaacacagcctat 108  Q
    ||||| ||||| || ||||||||||| | ||||||||| |  || ||||||||||| ||||| ||||| || ||||||||||| || |||||||| ||||    
T  19395974 tatgtagccttagcagctcccatcataaggtctctaataagtgtacctcctccaaatttctttttgaaattggcatataaatgcctcaaacacagtctat 19395875  T
Q  109 g 109  Q
    |    
T  19395874 g 19395874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 4e-21; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 2 - 114
Target Start/End: Complemental strand, 26268885 - 26268773
Alignment:
Q  2 ttgggaatatgttgcctttgctgctcccatcatcaagtctctaatcaaggtccctcctccaaacttcttcttgaagttagcatataaatgtctgaaacac 101  Q
    |||| ||||||| ||||| || || ||||||||||||||||||||||| || |||||||||||||||||||| || |||||||| ||||| || || |||    
T  26268885 ttggtaatatgtagccttggcagcacccatcatcaagtctctaatcaatgttcctcctccaaacttcttcttaaaattagcatacaaatgccttaagcac 26268786  T
Q  102 agcctatgttcaa 114  Q
    | |||||| ||||    
T  26268785 aacctatggtcaa 26268773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 109
Target Start/End: Complemental strand, 31812435 - 31812335
Alignment:
Q  9 tatgttgcctttgctgctcccatcatcaagtctctaatcaaggtccctcctccaaacttcttcttgaagttagcatataaatgtctgaaacacagcctat 108  Q
    ||||| ||||| || ||||||||||| | ||||||||| |  || ||||||||||| ||||| ||||| || ||||||||||| || |||||||| ||||    
T  31812435 tatgtagccttagcagctcccatcataaggtctctaataagtgtacctcctccaaatttctttttgaaattggcatataaatgcctcaaacacagtctat 31812336  T
Q  109 g 109  Q
    |    
T  31812335 g 31812335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 419 - 505
Target Start/End: Complemental strand, 30964664 - 30964578
Alignment:
Q  419 tgttttcagatggcatccatccactccaatgaaaggcctacatccactcaaaaatccttttttacaaccttcaaagcagaaataaaa 505  Q
    |||||||| ||| |||||||| || || ||||| || ||||| ||| |||| || |||| |||||||||||||||||| ||||||||    
T  30964664 tgttttcaaatgacatccatctacacctatgaagggtctacaaccattcaagaacccttgtttacaaccttcaaagcaaaaataaaa 30964578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 30965080 - 30964966
Alignment:
Q  1 cttgggaatatgttgcctttgctgctcccatcatcaagtctctaatcaaggtccctcctccaaacttcttcttgaagttagcatataaatgtctgaaaca 100  Q
    ||||| |||| |||||||| | ||| ||||||||||||||||||||    | |||||||||||| || ||||| || || ||||| || || |||| |||    
T  30965080 cttggtaataagttgccttggatgcccccatcatcaagtctctaattgctgaccctcctccaaattttttcttaaaatttgcatacaagtgcctgagaca 30964981  T
Q  101 cagcctatgttcaac 115  Q
     || |||||||||||    
T  30964980 aagtctatgttcaac 30964966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0300 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0300
Description:

Target: scaffold0300; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 27 - 100
Target Start/End: Complemental strand, 18506 - 18433
Alignment:
Q  27 cccatcatcaagtctctaatcaaggtccctcctccaaacttcttcttgaagttagcatataaatgtctgaaaca 100  Q
    |||||||||| ||| || |||||||| || || ||||||||||||||| |||| |||||||||||||| |||||    
T  18506 cccatcatcaggtcccttatcaaggttccaccaccaaacttcttcttgtagtttgcatataaatgtcttaaaca 18433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 109
Target Start/End: Complemental strand, 886 - 786
Alignment:
Q  9 tatgttgcctttgctgctcccatcatcaagtctctaatcaaggtccctcctccaaacttcttcttgaagttagcatataaatgtctgaaacacagcctat 108  Q
    ||||| ||||| || ||||||||||| | ||||||||| |  || ||||||||||| ||||| ||||| || ||||||||||| || |||||||| ||||    
T  886 tatgtagccttagcagctcccatcataaggtctctaataagtgtacctcctccaaatttctttttgaaattggcatataaatgcctcaaacacagtctat 787  T
Q  109 g 109  Q
    |    
T  786 g 786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University