View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18532_high_35 (Length: 267)

Name: NF18532_high_35
Description: NF18532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18532_high_35
NF18532_high_35
[»] chr7 (13 HSPs)
chr7 (1-267)||(4697820-4698086)
chr7 (1-267)||(4863109-4863375)
chr7 (1-267)||(4846651-4846917)
chr7 (1-267)||(4712696-4712962)
chr7 (1-263)||(4784465-4784727)
chr7 (1-263)||(4816894-4817156)
chr7 (88-265)||(4642926-4643103)
chr7 (5-187)||(4671940-4672122)
chr7 (6-181)||(4661110-4661285)
chr7 (6-221)||(4666201-4666416)
chr7 (6-221)||(4630175-4630390)
chr7 (1-184)||(4652823-4653006)
chr7 (88-187)||(4636157-4636256)
[»] chr4 (1 HSPs)
chr4 (6-256)||(18926374-18926624)
[»] chr6 (1 HSPs)
chr6 (69-188)||(5479308-5479427)


Alignment Details
Target: chr7 (Bit Score: 259; Significance: 1e-144; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 267
Target Start/End: Original strand, 4697820 - 4698086
Alignment:
Q  1 tttttatcattggagttggagggtatggtaacgtgttcaaaggttacatcgatgaaggtacacctgtagcaataaaacgtttgaaaccgggttctcaaca 100  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4697820 tttttatcattggagttggagggtttggtaacgtgttcaaaggttacatcgatgaaggtacacctgtagcaataaaacgtttgaaaccgggttctcaaca 4697919  T
Q  101 gggtgtaaacgagttcatgaatgaaatcgagttgctctctcaacttcgtcacattcacttggtttctctcattggatattgcaacgaaggtgcagagatg 200  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4697920 aggtgtaaacgagttcatgaatgaaatcgagttgctctctcaacttcgtcacattcacttggtttctctcattggatattgcaacgaaggtgcagagatg 4698019  T
Q  201 attctcgtttacgacttcatggaacgtggcactcttcgtgaatatctctatggttcggataacgaac 267  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4698020 attctcgtttacgacttcatggaacgtggcactcttcgtgaatatctctatggttcggataacgaac 4698086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 267
Target Start/End: Complemental strand, 4863375 - 4863109
Alignment:
Q  1 tttttatcattggagttggagggtatggtaacgtgttcaaaggttacatcgatgaaggtacacctgtagcaataaaacgtttgaaaccgggttctcaaca 100  Q
    |||| |||||||||||||||||||  || ||||||| ||||||||| || |||| ||  | |||||| || ||||||||| | ||||| |||||||||||    
T  4863375 ttttcatcattggagttggagggttcggcaacgtgtacaaaggttatattgatggagacatacctgttgcgataaaacgtcttaaaccaggttctcaaca 4863276  T
Q  101 gggtgtaaacgagttcatgaatgaaatcgagttgctctctcaacttcgtcacattcacttggtttctctcattggatattgcaacgaaggtgcagagatg 200  Q
     ||| |||| |||||||||||||| ||||| || |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||  ||||||    
T  4863275 aggtataaatgagttcatgaatgagatcgaattactctctcagcttcgtcatattcacttggtttctctcattggatattgcaacgaaggtgaggagatg 4863176  T
Q  201 attctcgtttacgacttcatggaacgtggcactcttcgtgaatatctctatggttcggataacgaac 267  Q
    ||||||||||| ||||||||| ||||||||||||| ||||||||||| |||||||||||||| ||||    
T  4863175 attctcgtttatgacttcatgcaacgtggcactctccgtgaatatctttatggttcggataatgaac 4863109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 1 - 267
Target Start/End: Original strand, 4846651 - 4846917
Alignment:
Q  1 tttttatcattggagttggagggtatggtaacgtgttcaaaggttacatcgatgaaggtacacctgtagcaataaaacgtttgaaaccgggttctcaaca 100  Q
    ||||||||||||||| ||||||||  || ||||||| ||||||||||||| ||| |   |||||||| || |||||||||   ||||||||||||| | |    
T  4846651 tttttatcattggagctggagggttcggcaacgtgtacaaaggttacatcaatggactcacacctgttgcgataaaacgtcgtaaaccgggttctcgata 4846750  T
Q  101 gggtgtaaacgagttcatgaatgaaatcgagttgctctctcaacttcgtcacattcacttggtttctctcattggatattgcaacgaaggtgcagagatg 200  Q
     ||| |||| || |||||||||||||||||| |||||||||| |||||||| |||||||||||||| |||||||||||||||||||||| ||||||||||    
T  4846751 aggtctaaatgaattcatgaatgaaatcgagatgctctctcagcttcgtcatattcacttggtttccctcattggatattgcaacgaagatgcagagatg 4846850  T
Q  201 attctcgtttacgacttcatggaacgtggcactcttcgtgaatatctctatggttcggataacgaac 267  Q
    ||||| ||||| ||||||||| ||||||| |||||  ||||| ||||||||||||||||||| ||||    
T  4846851 attctagtttatgacttcatgcaacgtggtactctcagtgaacatctctatggttcggataatgaac 4846917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 1 - 267
Target Start/End: Original strand, 4712696 - 4712962
Alignment:
Q  1 tttttatcattggagttggagggtatggtaacgtgttcaaaggttacatcgatgaaggtacacctgtagcaataaaacgtttgaaaccgggttctcaaca 100  Q
    |||||||||| || |||||||| |  || ||||||| |||||||||||| |||| |   | |||||| || |||||||||   |||  |||||||| |||    
T  4712696 tttttatcatcggggttggaggattcggcaacgtgtacaaaggttacattgatggactcatacctgttgcgataaaacgtcgtaaattgggttctcgaca 4712795  T
Q  101 gggtgtaaacgagttcatgaatgaaatcgagttgctctctcaacttcgtcacattcacttggtttctctcattggatattgcaacgaaggtgcagagatg 200  Q
     ||| |||| || ||||||||||||||||||||||||||||| |||||||| |||||||| ||||| ||||||||||||||||| |||| ||||||||||    
T  4712796 aggtctaaatgaattcatgaatgaaatcgagttgctctctcagcttcgtcatattcacttagtttccctcattggatattgcaatgaagatgcagagatg 4712895  T
Q  201 attctcgtttacgacttcatggaacgtggcactcttcgtgaatatctctatggttcggataacgaac 267  Q
    ||||| ||||| ||||| ||||||| ||||||||| |||||| ||||||||||||||||||||||||    
T  4712896 attcttgtttatgactttatggaacatggcactctccgtgaacatctctatggttcggataacgaac 4712962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 4784465 - 4784727
Alignment:
Q  1 tttttatcattggagttggagggtatggtaacgtgttcaaaggttacatcgatgaaggtacacctgtagcaataaaacgtttgaaaccgggttctcaaca 100  Q
    |||||||||| || ||||||||||  || || |||| ||||||||| || |||| || |||||| || || ||||||||| | ||||| |||||||||||    
T  4784465 tttttatcatcggggttggagggttcggcaatgtgtacaaaggttatattgatggagttacaccagttgcgataaaacgtcttaaaccaggttctcaaca 4784564  T
Q  101 gggtgtaaacgagttcatgaatgaaatcgagttgctctctcaacttcgtcacattcacttggtttctctcattggatattgcaacgaaggtgcagagatg 200  Q
     ||||| ||||||||| ||||||| || |||||||||||||| |||||||| |||||||||||||| || |||||||||||||| ||||||| |||||||    
T  4784565 aggtgtgaacgagttcttgaatgagattgagttgctctctcagcttcgtcatattcacttggtttcacttattggatattgcaatgaaggtgtagagatg 4784664  T
Q  201 attctcgtttacgacttcatggaacgtggcactcttcgtgaatatctctatggttcggataac 263  Q
    ||||||||||| ||||||||| ||||||||| |||  |||||||||| ||||| || ||||||    
T  4784665 attctcgtttatgacttcatgcaacgtggcagtctatgtgaatatctttatggatcagataac 4784727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 4816894 - 4817156
Alignment:
Q  1 tttttatcattggagttggagggtatggtaacgtgttcaaaggttacatcgatgaaggtacacctgtagcaataaaacgtttgaaaccgggttctcaaca 100  Q
    |||||||||| || ||||||||||  || || |||| ||||||||| || |||| || |||||| || || ||||||||| | ||||| |||||||||||    
T  4816894 tttttatcatcggggttggagggttcggcaatgtgtacaaaggttatattgatggagttacaccagttgcgataaaacgtcttaaacctggttctcaaca 4816993  T
Q  101 gggtgtaaacgagttcatgaatgaaatcgagttgctctctcaacttcgtcacattcacttggtttctctcattggatattgcaacgaaggtgcagagatg 200  Q
     ||||| ||||||||| ||||||| || |||||||||||||| |||||||| |||||||||||||| || |||||||||||||| ||||||| |||||||    
T  4816994 aggtgttaacgagttcttgaatgagattgagttgctctctcagcttcgtcatattcacttggtttcacttattggatattgcaatgaaggtgtagagatg 4817093  T
Q  201 attctcgtttacgacttcatggaacgtggcactcttcgtgaatatctctatggttcggataac 263  Q
    ||||||||||| ||||||||| ||||||||| |||  |||||||||| ||||| || ||||||    
T  4817094 attctcgtttatgacttcatgcaacgtggcagtctatgtgaatatctttatggatcagataac 4817156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 88 - 265
Target Start/End: Complemental strand, 4643103 - 4642926
Alignment:
Q  88 cgggttctcaacagggtgtaaacgagttcatgaatgaaatcgagttgctctctcaacttcgtcacattcacttggtttctctcattggatattgcaacga 187  Q
    |||| |||||||| ||||  |||||||||||||||||||||||||||||||| || ||||| |||||||||||||| || ||| | ||||||||||||||    
T  4643103 cgggctctcaacaaggtgccaacgagttcatgaatgaaatcgagttgctctcccagcttcgccacattcacttggtgtccctcgtgggatattgcaacga 4643004  T
Q  188 aggtgcagagatgattctcgtttacgacttcatggaacgtggcactcttcgtgaatatctctatggttcggataacga 265  Q
     |   ||||||||||| | ||||| || |||||| | |  || |||||| |||| ||||| ||||||||  |||||||    
T  4643003 tgacacagagatgattttggtttatgagttcatgcagcacggtactctttgtgagtatctttatggttctaataacga 4642926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 5 - 187
Target Start/End: Complemental strand, 4672122 - 4671940
Alignment:
Q  5 tatcattggagttggagggtatggtaacgtgttcaaaggttacatcgatgaaggtacacctgtagcaataaaacgtttgaaaccgggttctcaacagggt 104  Q
    |||||| ||||||||||||| ||| ||| ||| ||||||||   |||||| |   |||| ||| || ||||||||  | ||| |||| ||||| || |||    
T  4672122 tatcatcggagttggagggtttggaaacctgtacaaaggttgtgtcgatggatccacacttgttgccataaaacggctcaaatcgggctctcagcaaggt 4672023  T
Q  105 gtaaacgagttcatgaatgaaatcgagttgctctctcaacttcgtcacattcacttggtttctctcattggatattgcaacga 187  Q
    |  |||||||||||||| ||||||||||| |||||||||||||| |||||||||||||| || ||| ||||||||||| ||||    
T  4672022 gccaacgagttcatgaacgaaatcgagttactctctcaacttcgccacattcacttggtatccctcgttggatattgcgacga 4671940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 6 - 181
Target Start/End: Complemental strand, 4661285 - 4661110
Alignment:
Q  6 atcattggagttggagggtatggtaacgtgttcaaaggttacatcgatgaaggtacacctgtagcaataaaacgtttgaaaccgggttctcaacagggtg 105  Q
    ||||||||||||||||||| ||| ||||||| ||||||||   | |||| |   |||| ||| || || |||||  | ||| |||| |||||||| ||||    
T  4661285 atcattggagttggagggtttggcaacgtgtacaaaggttgtgttgatggatcaacacttgttgcgattaaacgcctcaaatcgggctctcaacaaggtg 4661186  T
Q  106 taaacgagttcatgaatgaaatcgagttgctctctcaacttcgtcacattcacttggtttctctcattggatattg 181  Q
    | |||||||||||||| ||||||||||||||||| || ||||| |||||||| ||||| || ||||| ||||||||    
T  4661185 tcaacgagttcatgaacgaaatcgagttgctctcccagcttcgccacattcatttggtgtccctcatgggatattg 4661110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 6 - 221
Target Start/End: Complemental strand, 4666416 - 4666201
Alignment:
Q  6 atcattggagttggagggtatggtaacgtgttcaaaggttacatcgatgaaggtacacctgtagcaataaaacgtttgaaaccgggttctcaacagggtg 105  Q
    ||||| ||||||||||||| ||| ||||||| ||||||||   |||||| |   |||| ||| || ||||||||  | ||| | || |||||||| ||||    
T  4666416 atcatcggagttggagggtttggcaacgtgtacaaaggttgtgtcgatggatccacacttgttgccataaaacgcctcaaatcaggctctcaacaaggtg 4666317  T
Q  106 taaacgagttcatgaatgaaatcgagttgctctctcaacttcgtcacattcacttggtttctctcattggatattgcaacgaaggtgcagagatgattct 205  Q
      |||||||||||||| |||||||| ||||||||||| ||||| |||||||||||||| || ||  | ||||||||||| || |   |||||||||||||    
T  4666316 ccaacgagttcatgaacgaaatcgaattgctctctcagcttcgccacattcacttggtatcccttgtgggatattgcaatgacgacacagagatgattct 4666217  T
Q  206 cgtttacgacttcatg 221  Q
     ||||| || ||||||    
T  4666216 ggtttatgagttcatg 4666201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 6 - 221
Target Start/End: Complemental strand, 4630390 - 4630175
Alignment:
Q  6 atcattggagttggagggtatggtaacgtgttcaaaggttacatcgatgaaggtacacctgtagcaataaaacgtttgaaaccgggttctcaacagggtg 105  Q
    ||||| ||| ||||||||| ||| ||||||| ||||||||   |||||| |   |||||||| || ||||||||  | ||| | || |||||||| ||||    
T  4630390 atcatcggatttggagggtttgggaacgtgtacaaaggttgtgtcgatggatccacacctgttgcgataaaacgcctcaaatcaggctctcaacaaggtg 4630291  T
Q  106 taaacgagttcatgaatgaaatcgagttgctctctcaacttcgtcacattcacttggtttctctcattggatattgcaacgaaggtgcagagatgattct 205  Q
      |||||||||||||| ||||||||||||||||| || ||||| |||||||||||||| || ||  | ||||||||||| ||     |||||||||||||    
T  4630290 ccaacgagttcatgaacgaaatcgagttgctctcccagcttcgccacattcacttggtgtcccttgtaggatattgcaatgacaacacagagatgattct 4630191  T
Q  206 cgtttacgacttcatg 221  Q
     ||||| || ||||||    
T  4630190 ggtttatgagttcatg 4630175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 4653006 - 4652823
Alignment:
Q  1 tttttatcattggagttggagggtatggtaacgtgttcaaaggttacatcgatgaaggtacacctgtagcaataaaacgtttgaaaccgggttctcaaca 100  Q
    |||| ||||| || |||||||| | ||| ||||||| |||||||| |||||||| |   |  ||||| || ||||||||  | ||| | || ||||||||    
T  4653006 ttttcatcatcggtgttggaggatttggcaacgtgtacaaaggttgcatcgatggatccatgcctgttgcgataaaacgcctcaaatctggctctcaaca 4652907  T
Q  101 gggtgtaaacgagttcatgaatgaaatcgagttgctctctcaacttcgtcacattcacttggtttctctcattggatattgcaa 184  Q
     ||||  ||||||||||||||||| |||||||| ||||| || ||||| |||||||||||||| || ||| | |||||||||||    
T  4652906 aggtgccaacgagttcatgaatgagatcgagttactctcccagcttcgccacattcacttggtatccctcgtgggatattgcaa 4652823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 88 - 187
Target Start/End: Complemental strand, 4636256 - 4636157
Alignment:
Q  88 cgggttctcaacagggtgtaaacgagttcatgaatgaaatcgagttgctctctcaacttcgtcacattcacttggtttctctcattggatattgcaacga 187  Q
    |||| |||||||| |||| ||| ||||||||||| || |||||||||||||| || ||||| |||||||||||||| || ||  | ||||||||||||||    
T  4636256 cgggctctcaacaaggtgcaaatgagttcatgaacgagatcgagttgctctcccagcttcgccacattcacttggtatcccttgtgggatattgcaacga 4636157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 67; Significance: 8e-30; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 6 - 256
Target Start/End: Original strand, 18926374 - 18926624
Alignment:
Q  6 atcattggagttggagggtatggtaacgtgttcaaaggttacatcgatgaaggtacacctgtagcaataaaacgtttgaaaccgggttctcaacagggtg 105  Q
    ||||| ||||||||||||| ||| |||||||  ||||||| ||||||| ||   ||||| || |||||||||||| | ||||| || |||||||| || |    
T  18926374 atcatcggagttggagggtttggcaacgtgtataaaggtttcatcgataaatccacacccgttgcaataaaacgtctcaaaccaggctctcaacaagggg 18926473  T
Q  106 taaacgagttcatgaatgaaatcgagttgctctctcaacttcgtcacattcacttggtttctctcattggatattgcaacgaaggtgcagagatgattct 205  Q
      ||||||||||||||||| ||||||||||||||||||||||| ||||||||  |||| || ||| | || || |||||||       ||||||||||||    
T  18926474 ccaacgagttcatgaatgagatcgagttgctctctcaacttcgccacattcatctggtatccctcgtcgggtactgcaacggcaacaaagagatgattct 18926573  T
Q  206 cgtttacgacttcatggaacgtggcactcttcgtgaatatctctatggttc 256  Q
      |||| || |||||| ||||||| |||||| |||| ||||| ||||||||    
T  18926574 gatttatgagttcatgcaacgtggtactctttgtgagtatctatatggttc 18926624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 69 - 188
Target Start/End: Original strand, 5479308 - 5479427
Alignment:
Q  69 gcaataaaacgtttgaaaccgggttctcaacagggtgtaaacgagttcatgaatgaaatcgagttgctctctcaacttcgtcacattcacttggtttctc 168  Q
    |||||||||||  | ||||||||||| ||||| |||| ||| |||||||| |||||||||||  |||||||  | |||||||| |||||  | ||||||     
T  5479308 gcaataaaacggcttaaaccgggttcacaacaaggtgaaaatgagttcatcaatgaaatcgacatgctctcgaagcttcgtcatattcatcttgtttctt 5479407  T
Q  169 tcattggatattgcaacgaa 188  Q
    | ||||| || |||||||||    
T  5479408 tgattggttactgcaacgaa 5479427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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