View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18532_high_47 (Length: 206)
Name: NF18532_high_47
Description: NF18532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18532_high_47 |
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Alignment Details
Target: chr5 (Bit Score: 174; Significance: 8e-94; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 13 - 190
Target Start/End: Complemental strand, 278193 - 278016
Alignment:
| Q |
13 |
gaacctgtgcagtaactattgtggaatcatatggtggccaaaatgtagtttcagttccgaaattggaattttgatagaaatgttgtgagaatgaggagtt |
112 |
Q |
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| T |
278193 |
gaacttgtgcagtaactattgtggaatcatatggtggccaaaatgtagtttcagttccgaaattggaattttgatagaaatgttgtgagaatgaggagtt |
278094 |
T |
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| Q |
113 |
accaagtaactggttcataaagtcagattcctcagcagtgtagagtccactaagagaagtccattcttgagaaataag |
190 |
Q |
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| T |
278093 |
accaagtaactggttcataaagtcagattcctcagcagtgtagagtccactaagagaagtccattcttgagaaataag |
278016 |
T |
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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 180
Target Start/End: Original strand, 48142185 - 48142249
Alignment:
| Q |
116 |
aagtaactggttcataaagtcagattcctcagcagtgtagagtccactaagagaagtccattctt |
180 |
Q |
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| T |
48142185 |
aagtaactggcccataaaatcagcttcctcagctgtgtaaaatccactaagagaactccattctt |
48142249 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 120 - 187
Target Start/End: Original strand, 48146974 - 48147041
Alignment:
| Q |
120 |
aactggttcataaagtcagattcctcagcagtgtagagtccactaagagaagtccattcttgagaaat |
187 |
Q |
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| T |
48146974 |
aactgattcatgaagtcagcttcctcagctgtgtactgtccactaagagaatcccattcttcagaaat |
48147041 |
T |
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