View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18532_high_6 (Length: 538)
Name: NF18532_high_6
Description: NF18532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18532_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 435; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 19 - 532
Target Start/End: Original strand, 45545566 - 45546067
Alignment:
| Q |
19 |
gtttaatgatgctgcaaggaagttttatgacaaatttgctatgggaaaggtgtattacatttcaaagggatctttgaaagttgctaacaaaaatttcaaa |
118 |
Q |
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| T |
45545566 |
gtttaatgatgctgcaaggaagttttatgacaaatttgctatgggaaaggtgtattacatttcaaagggatctttgaaagttgctaacaaaaatttcaaa |
45545665 |
T |
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| Q |
119 |
actgtggcaaacgattatgaaatgacattgaatgagaattctgaggtggaagaggttgccaatgaagctgcttttgttccagagactaaattcaattttg |
218 |
Q |
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| T |
45545666 |
actgtggtaaacgattatgaaatgacattgaatgagaattctgaggtggaagaggttgccaatgaagctgcttttgttccagagactaaattcaattttg |
45545765 |
T |
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| Q |
219 |
tcccaattgatcagttgggtccttacgtgaataagtctgagcttgttggtgagtgtttgttagaagtaatgctaccattgtttgtgttgctcttattgtt |
318 |
Q |
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| T |
45545766 |
tcccaattgatcagttgggtccttatgtgaataagtctgagcttgttggtgagtgtttgttaga-----------cattgtttgtgttgctcttattgtt |
45545854 |
T |
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| Q |
319 |
gtcatcttattgtttatttgttgtggatttcagatttagttggagttgttaagaatgtgtcttcaaccatgagcatccgaagaaagagcaacaatgagac |
418 |
Q |
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| T |
45545855 |
gtcatcttattgtttatttgttgtggatttcagatttagttggagttgttaagaatgtgtcttcaaccatgagcatccgtagaaagagcaacaatgagac |
45545954 |
T |
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| Q |
419 |
tgttccaaagcgtgacattactattgccgatgaaacgttagtgttttcgattctcttttacagtgttaggcaagtgtttattttataatgnnnnnnngat |
518 |
Q |
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| T |
45545955 |
tgttccaaagcgtgacattactattgccgatgaaacgttagtgttttcgattctcttttacagtgttaggcaagtg-ttattttataatgtgtttttgat |
45546053 |
T |
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| Q |
519 |
caatccctatgctt |
532 |
Q |
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| T |
45546054 |
caatccctatgctt |
45546067 |
T |
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