View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18532_low_10 (Length: 477)
Name: NF18532_low_10
Description: NF18532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18532_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 60 - 460
Target Start/End: Complemental strand, 32899387 - 32898987
Alignment:
| Q |
60 |
catagacgtactttagtcaatttaaaaatacagaattcaaacacttctaaataacacatgcttataataataaattataaatatccaccataggtacatc |
159 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32899387 |
catagacgtactttagtcaatttaaaaatacagaattcaaacacttctaaataacacatgcttataataataaattataaatatccaccataggtacatc |
32899288 |
T |
|
| Q |
160 |
ctatggctccctaacacataacaaaacacaattccaaaactacccttgtaaacaccaaaacctagtagtaacaacaatctagtacaatcaaacctaggca |
259 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
32899287 |
ctatggctccctaacacataacaaaacacaattccaaaactacccttggaaacaccaaaacctagtagtaacaacaatctagtacaatcaaacctacgca |
32899188 |
T |
|
| Q |
260 |
accttaaacaagttaaatcctaattaaaatctttgattgaaatcatagacacataattaaatctactactcataatccttaattaatagttccacatgca |
359 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
32899187 |
accttaaacaagttaaatcctaattaaaatatttgattgaaatcatagacaaataattaaatctactaatcataatccttaattaatagttccacatgca |
32899088 |
T |
|
| Q |
360 |
atcaagctcagaagaacctaatcctcccatgttgagaccaccaccactgtcaaccaccaccctttgctcctccgctggcatcccccagccaccaagaata |
459 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
32899087 |
atcaagctcagaagaacctaatcctcccatgttgagaccaccaccactgtcaaccaccaccctttgctcctccgatggcatcccccagccaccaagaata |
32898988 |
T |
|
| Q |
460 |
t |
460 |
Q |
| |
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| |
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|
| T |
32898987 |
t |
32898987 |
T |
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