View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18532_low_11 (Length: 453)

Name: NF18532_low_11
Description: NF18532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18532_low_11
NF18532_low_11
[»] chr1 (3 HSPs)
chr1 (16-236)||(2509403-2509623)
chr1 (255-364)||(2509306-2509415)
chr1 (404-434)||(8337936-8337966)
[»] chr7 (2 HSPs)
chr7 (404-434)||(42628318-42628348)
chr7 (404-433)||(45231877-45231906)
[»] chr2 (1 HSPs)
chr2 (404-434)||(38933610-38933640)
[»] chr4 (1 HSPs)
chr4 (401-434)||(17285815-17285848)
[»] chr5 (1 HSPs)
chr5 (402-434)||(16971165-16971197)


Alignment Details
Target: chr1 (Bit Score: 181; Significance: 1e-97; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 16 - 236
Target Start/End: Complemental strand, 2509623 - 2509403
Alignment:
Q  16 atgaaaagtataaatcaatgaataaagtcgcatcattccggttgatagtataaaacatcaaaatatttataaaagtgatcaaattaaattggttggagca 115  Q
    ||||||||||||||| ||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  2509623 atgaaaagtataaattaatgaataaagtcgcatcattcaagttgatagtataaaacatcaaaatatttataaaagtgataaaattaaattggttggagca 2509524  T
Q  116 cacatgactcgagatctgcagtgttgactatcaaactatcattggttgcggggatggtccaataaatttatagtagtcgaggcaatatatatacagatca 215  Q
    |||||||||||||||||||| |||||||  ||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||    
T  2509523 cacatgactcgagatctgcaatgttgaccgtcaaactatcattagttgcggggatggtctaataaatttatagtagtcgaggcaatatatatacatatca 2509424  T
Q  216 ttttatttttaaaagtataaa 236  Q
    |||||||||||||||||||||    
T  2509423 ttttatttttaaaagtataaa 2509403  T

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Target: chr1; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 255 - 364
Target Start/End: Complemental strand, 2509415 - 2509306
Alignment:
Q  255 ttaaaagtataaattatatatatcataattgttctttacgaaaatcgtattctaaaaatactaaatgattttattatatttaatggcaacaaaaatgaca 354  Q
    |||||||||||||||||||||||||||| |||||||| |||   ||||||| |||||||| |||||||||||||||||||||||||||||||||||||||    
T  2509415 ttaaaagtataaattatatatatcataaatgttctttgcgattttcgtattataaaaatattaaatgattttattatatttaatggcaacaaaaatgaca 2509316  T
Q  355 ctctctattg 364  Q
    ||||||||||    
T  2509315 ctctctattg 2509306  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 404 - 434
Target Start/End: Complemental strand, 8337966 - 8337936
Alignment:
Q  404 ttgggtgacattgaccaatcacaatgccaca 434  Q
    |||||||||||||||||||||||||||||||    
T  8337966 ttgggtgacattgaccaatcacaatgccaca 8337936  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 404 - 434
Target Start/End: Original strand, 42628318 - 42628348
Alignment:
Q  404 ttgggtgacattgaccaatcacaatgccaca 434  Q
    |||||||||||||||||||||||||||||||    
T  42628318 ttgggtgacattgaccaatcacaatgccaca 42628348  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 404 - 433
Target Start/End: Original strand, 45231877 - 45231906
Alignment:
Q  404 ttgggtgacattgaccaatcacaatgccac 433  Q
    ||||||||||||||||||||||||||||||    
T  45231877 ttgggtgacattgaccaatcacaatgccac 45231906  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 404 - 434
Target Start/End: Original strand, 38933610 - 38933640
Alignment:
Q  404 ttgggtgacattgaccaatcacaatgccaca 434  Q
    |||||||||||||||||||||||||||||||    
T  38933610 ttgggtgacattgaccaatcacaatgccaca 38933640  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 401 - 434
Target Start/End: Complemental strand, 17285848 - 17285815
Alignment:
Q  401 cacttgggtgacattgaccaatcacaatgccaca 434  Q
    ||||||||||||||||||||||||||||| ||||    
T  17285848 cacttgggtgacattgaccaatcacaatgtcaca 17285815  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 402 - 434
Target Start/End: Original strand, 16971165 - 16971197
Alignment:
Q  402 acttgggtgacattgaccaatcacaatgccaca 434  Q
    ||||||||||||||| |||||||||||||||||    
T  16971165 acttgggtgacattggccaatcacaatgccaca 16971197  T

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