View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18532_low_13 (Length: 430)
Name: NF18532_low_13
Description: NF18532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18532_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 353; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 16 - 412
Target Start/End: Complemental strand, 1748681 - 1748285
Alignment:
| Q |
16 |
atatcgacttcataagaaatgaaagagcatcagatcttgctggtgtatcttcaacaaatgctcttacttttataggtaaaaaccaaatcctaccaatttt |
115 |
Q |
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| T |
1748681 |
atatcgacttcataagaaatgaaagagcatcagatcttgctggtgtatcttcaacaaatgctcttacttttataggtaaaaaccaaatcctaccaatttt |
1748582 |
T |
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| Q |
116 |
attggtatatatatgtgtgcggagatagggatgaaatgtgatttaatacatatatgaaatatggcaaatgctaactaactcatgcatagtatatattggg |
215 |
Q |
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| T |
1748581 |
attggtatatatatgtgtgtggagatagggatgaaatgtgatttaatacatatatgaaatatggcaaatgctaactaactcatgcatagtatatattggg |
1748482 |
T |
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| Q |
216 |
gataactatatgtttttgatatgnnnnnnnnnnnngtaggggaatggacgggtgagtggaccatacaaaatgcgtctaagcaagatttccaaaacttcgc |
315 |
Q |
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| T |
1748481 |
gataactatatgtttttgatatgttttttctttttgtaggggaatggacgggtgagtggaccatacaaaatgcgtctaagcaagatttccaaaacttcgc |
1748382 |
T |
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| Q |
316 |
ccaagcccaattggatgtgtattctcggacaacatttggatgggcttattggtcctacaaatgtcagtttaatcgttggagccttaagtggatgatc |
412 |
Q |
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| T |
1748381 |
ccaagcccaattggatgtgtattctcgggcaacatttggatgggcttattggtcctacaaatgtcagtttaatcgttggagccttaagtggatgatc |
1748285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 251 - 382
Target Start/End: Complemental strand, 1738556 - 1738425
Alignment:
| Q |
251 |
gtaggggaatggacgggtgagtggaccatacaaaatgcgtctaagcaagatttccaaaacttcgcccaagcccaattggatgtgtattctcggacaacat |
350 |
Q |
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| T |
1738556 |
gtaggggaatggacggctgaatggagcatacaaggtgcgtctatgcaagactaccaaagatatgtccaaacacaaatggatgtatattctcgtgcaacat |
1738457 |
T |
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| Q |
351 |
ttggatgggcttattggtcctacaaatgtcag |
382 |
Q |
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| T |
1738456 |
ttggatgggctttttggtcctataaatgtcag |
1738425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 316 - 412
Target Start/End: Complemental strand, 1753637 - 1753541
Alignment:
| Q |
316 |
ccaagcccaattggatgtgtattctcggacaacatttggatgggcttattggtcctacaaatgtcagtttaatcgttggagccttaagtggatgatc |
412 |
Q |
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| T |
1753637 |
ccaagcacaactagatgtgtattctcgtgcaacatttggatgggcttattgggcatacaaatgtcaatataaccattggagtctcaagtggatgatc |
1753541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 316 - 412
Target Start/End: Complemental strand, 1717085 - 1716989
Alignment:
| Q |
316 |
ccaagcccaattggatgtgtattctcggacaacatttggatgggcttattggtcctacaaatgtcagtttaatcgttggagccttaagtggatgatc |
412 |
Q |
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| T |
1717085 |
ccaagcacaaatggatgtgtattctcatgcaacatttggatgggcctattgggcctacaaatgtcaatataaccattggagtctcaagtggttgatc |
1716989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 16 - 106
Target Start/End: Complemental strand, 1717329 - 1717239
Alignment:
| Q |
16 |
atatcgacttcataagaaatgaaagagcatcagatcttgctggtgtatcttcaacaaatgctcttacttttataggtaaaaaccaaatcct |
106 |
Q |
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|||| |||| |||||||||||| ||||| | |||||| |||||| |||||| |||||||||||| |||| |||||||| |||||||||| |
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| T |
1717329 |
atattgactacataagaaatgatagagcctgggatcttagtggtgtctcttcatcaaatgctcttagttttgtaggtaaataccaaatcct |
1717239 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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