View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18532_low_18 (Length: 403)

Name: NF18532_low_18
Description: NF18532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18532_low_18
NF18532_low_18
[»] chr7 (5 HSPs)
chr7 (173-393)||(1269817-1270039)
chr7 (19-116)||(1270093-1270190)
chr7 (204-244)||(5458093-5458133)
chr7 (204-244)||(22690058-22690098)
chr7 (204-244)||(44819515-44819555)
[»] chr6 (1 HSPs)
chr6 (19-116)||(6975405-6975502)
[»] chr3 (2 HSPs)
chr3 (202-244)||(47099057-47099099)
chr3 (204-244)||(4332689-4332729)
[»] scaffold0009 (1 HSPs)
scaffold0009 (199-247)||(17719-17767)
[»] chr8 (5 HSPs)
chr8 (198-245)||(39974837-39974884)
chr8 (202-244)||(10320493-10320535)
chr8 (202-244)||(42367726-42367768)
chr8 (204-244)||(5728537-5728577)
chr8 (201-237)||(40094884-40094920)
[»] chr5 (4 HSPs)
chr5 (202-244)||(11188710-11188752)
chr5 (202-244)||(15241396-15241438)
chr5 (203-244)||(36124400-36124441)
chr5 (204-244)||(36623196-36623236)
[»] chr2 (2 HSPs)
chr2 (202-244)||(20296418-20296460)
chr2 (204-244)||(346146-346186)
[»] scaffold0113 (1 HSPs)
scaffold0113 (203-244)||(37076-37117)
[»] chr1 (2 HSPs)
chr1 (202-243)||(26763566-26763607)
chr1 (204-244)||(13794530-13794570)
[»] chr4 (1 HSPs)
chr4 (204-244)||(17216151-17216191)


Alignment Details
Target: chr7 (Bit Score: 108; Significance: 4e-54; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 173 - 393
Target Start/End: Complemental strand, 1270039 - 1269817
Alignment:
Q  173 gttctgtcgacaaaagatataatatatgtcccgtgagcttagctcagttgattagaatattgcataatatatatatct--aatgttcgaactcctgacac 270  Q
    ||||||| ||||||||||||||||||||| |||||| ||||||||||||||||||||||||| ||||||||||||| |  ||||||||||||| ||||||    
T  1270039 gttctgttgacaaaagatataatatatgttccgtgaacttagctcagttgattagaatattgtataatatatatatattaaatgttcgaactcttgacac 1269940  T
Q  271 tttactagattatttgacnnnnnnnn-ttatgatatatatcnnnnnnnnaaggtgatataattatatctctctttattgagtgattaaggtcaaatcatt 369  Q
     | ||||| |||||||||         |||| |||||||||        |||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  1269939 ctcactaggttatttgacaaaaaaaaattataatatatatcttttttt-aaggtgatataaatatatctctctttattgagtgattaaggtcaaatcatt 1269841  T
Q  370 ttctttttgttctcttttcctatg 393  Q
    ||||||||||||||||||||||||    
T  1269840 ttctttttgttctcttttcctatg 1269817  T

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Target: chr7; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 19 - 116
Target Start/End: Complemental strand, 1270190 - 1270093
Alignment:
Q  19 aaaggtcacccaatattatgtcttcaaaggccattctagggagcacagatgctggaggatagagcctcaatgactcgttgattaccatatgtaactgc 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1270190 aaaggtcacccaatattatgtcttcaaaggccattctagggagcacagatgctggaggatagagcctcaatgactcgttgattaccatatgtaactgc 1270093  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 204 - 244
Target Start/End: Complemental strand, 5458133 - 5458093
Alignment:
Q  204 cgtgagcttagctcagttgattagaatattgcataatatat 244  Q
    ||||||||||||||||||||| |||| | ||||||||||||    
T  5458133 cgtgagcttagctcagttgataagaacaatgcataatatat 5458093  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 204 - 244
Target Start/End: Complemental strand, 22690098 - 22690058
Alignment:
Q  204 cgtgagcttagctcagttgattagaatattgcataatatat 244  Q
    ||||||||||||||||||| | |||||| ||||||||||||    
T  22690098 cgtgagcttagctcagttgctaagaataatgcataatatat 22690058  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 204 - 244
Target Start/End: Complemental strand, 44819555 - 44819515
Alignment:
Q  204 cgtgagcttagctcagttgattagaatattgcataatatat 244  Q
    |||||||||||||||||||||||||| | ||||||| ||||    
T  44819555 cgtgagcttagctcagttgattagaacaatgcataaaatat 44819515  T

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Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 19 - 116
Target Start/End: Complemental strand, 6975502 - 6975405
Alignment:
Q  19 aaaggtcacccaatattatgtcttcaaaggccattctagggagcacagatgctggaggatagagcctcaatgactcgttgattaccatatgtaactgc 116  Q
    |||||||||| | ||  ||||||| ||| ||||||||||||||||  | ||||||||||||||| |||| ||| || |||||||||||||| ||||||    
T  6975502 aaaggtcacctagtacaatgtcttgaaaagccattctagggagcaaggttgctggaggatagagtctcattgattcattgattaccatatgcaactgc 6975405  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 202 - 244
Target Start/End: Complemental strand, 47099099 - 47099057
Alignment:
Q  202 cccgtgagcttagctcagttgattagaatattgcataatatat 244  Q
    ||||||||||||||||||||||| |||||| ||||||||||||    
T  47099099 cccgtgagcttagctcagttgataagaataatgcataatatat 47099057  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 204 - 244
Target Start/End: Complemental strand, 4332729 - 4332689
Alignment:
Q  204 cgtgagcttagctcagttgattagaatattgcataatatat 244  Q
    ||||||||||||||||||| || ||||| ||||||||||||    
T  4332729 cgtgagcttagctcagttggtttgaataatgcataatatat 4332689  T

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Target: scaffold0009 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 199 - 247
Target Start/End: Original strand, 17719 - 17767
Alignment:
Q  199 tgtcccgtgagcttagctcagttgattagaatattgcataatatatata 247  Q
    ||||||||||||||||||||||||||| | | | |||||||||||||||    
T  17719 tgtcccgtgagcttagctcagttgatttggacaatgcataatatatata 17767  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 198 - 245
Target Start/End: Original strand, 39974837 - 39974884
Alignment:
Q  198 atgtcccgtgagcttagctcagttgattagaatattgcataatatata 245  Q
    ||||||||||||||||||||||||| |  |||||||||||||| ||||    
T  39974837 atgtcccgtgagcttagctcagttggtaggaatattgcataatttata 39974884  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 202 - 244
Target Start/End: Original strand, 10320493 - 10320535
Alignment:
Q  202 cccgtgagcttagctcagttgattagaatattgcataatatat 244  Q
    |||||||| |||||||||||||| |||||| ||||||||||||    
T  10320493 cccgtgagtttagctcagttgataagaataatgcataatatat 10320535  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 202 - 244
Target Start/End: Original strand, 42367726 - 42367768
Alignment:
Q  202 cccgtgagcttagctcagttgattagaatattgcataatatat 244  Q
    ||||||||||||||||||||||| |||| | ||||||||||||    
T  42367726 cccgtgagcttagctcagttgataagaacaatgcataatatat 42367768  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 204 - 244
Target Start/End: Original strand, 5728537 - 5728577
Alignment:
Q  204 cgtgagcttagctcagttgattagaatattgcataatatat 244  Q
    ||||||||||||||||||||| |||| | ||||||||||||    
T  5728537 cgtgagcttagctcagttgatgagaacaatgcataatatat 5728577  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 201 - 237
Target Start/End: Original strand, 40094884 - 40094920
Alignment:
Q  201 tcccgtgagcttagctcagttgattagaatattgcat 237  Q
    |||||||||||||||||||||||| || |||||||||    
T  40094884 tcccgtgagcttagctcagttgataaggatattgcat 40094920  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 202 - 244
Target Start/End: Complemental strand, 11188752 - 11188710
Alignment:
Q  202 cccgtgagcttagctcagttgattagaatattgcataatatat 244  Q
    |||||||||||||||||||||||  |||||||||||| |||||    
T  11188752 cccgtgagcttagctcagttgataggaatattgcatattatat 11188710  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 202 - 244
Target Start/End: Original strand, 15241396 - 15241438
Alignment:
Q  202 cccgtgagcttagctcagttgattagaatattgcataatatat 244  Q
    |||||||||||||||||||||||  |||||||||||| |||||    
T  15241396 cccgtgagcttagctcagttgataggaatattgcatattatat 15241438  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 244
Target Start/End: Original strand, 36124400 - 36124441
Alignment:
Q  203 ccgtgagcttagctcagttgattagaatattgcataatatat 244  Q
    ||||||||||||||||||||||  |||||||||||| |||||    
T  36124400 ccgtgagcttagctcagttgataggaatattgcatattatat 36124441  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 204 - 244
Target Start/End: Complemental strand, 36623236 - 36623196
Alignment:
Q  204 cgtgagcttagctcagttgattagaatattgcataatatat 244  Q
    |||||||||| |||||||||| |||||| ||||||||||||    
T  36623236 cgtgagcttaactcagttgataagaataatgcataatatat 36623196  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 202 - 244
Target Start/End: Original strand, 20296418 - 20296460
Alignment:
Q  202 cccgtgagcttagctcagttgattagaatattgcataatatat 244  Q
    ||||||||||||||||||||||| || |||||||||| |||||    
T  20296418 cccgtgagcttagctcagttgataaggatattgcatattatat 20296460  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 204 - 244
Target Start/End: Complemental strand, 346186 - 346146
Alignment:
Q  204 cgtgagcttagctcagttgattagaatattgcataatatat 244  Q
    ||||||||||||||||||| || ||||| ||||||||||||    
T  346186 cgtgagcttagctcagttggtttgaataatgcataatatat 346146  T

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Target: scaffold0113 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 244
Target Start/End: Complemental strand, 37117 - 37076
Alignment:
Q  203 ccgtgagcttagctcagttgattagaatattgcataatatat 244  Q
    ||||||||||| |||||||||| ||||||||||||| |||||    
T  37117 ccgtgagcttaactcagttgataagaatattgcatattatat 37076  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 243
Target Start/End: Complemental strand, 26763607 - 26763566
Alignment:
Q  202 cccgtgagcttagctcagttgattagaatattgcataatata 243  Q
    ||||||||||||||||||||||| |||| | |||||||||||    
T  26763607 cccgtgagcttagctcagttgataagaacaatgcataatata 26763566  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 204 - 244
Target Start/End: Complemental strand, 13794570 - 13794530
Alignment:
Q  204 cgtgagcttagctcagttgattagaatattgcataatatat 244  Q
    ||||||||||||||||||||| || ||| ||||||||||||    
T  13794570 cgtgagcttagctcagttgataaggataatgcataatatat 13794530  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 204 - 244
Target Start/End: Complemental strand, 17216191 - 17216151
Alignment:
Q  204 cgtgagcttagctcagttgattagaatattgcataatatat 244  Q
    |||||||| |||||||||||| |||||| ||||||||||||    
T  17216191 cgtgagctaagctcagttgataagaataatgcataatatat 17216151  T

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