View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18532_low_19 (Length: 386)
Name: NF18532_low_19
Description: NF18532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18532_low_19 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 10 - 386
Target Start/End: Original strand, 41404211 - 41404587
Alignment:
| Q |
10 |
acatcatctcttaacgaatcgatggatagatatactcagttgtttgagaaaagtatgagcaaagagatcaagtggcaaagctcgaagtctaaaagcttaa |
109 |
Q |
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| T |
41404211 |
acatcatctcttaacgaatcgatggatagatatactcagttgtttgagaaaagtatgagcaaagagatcaagtggcaaagctcgaagtctaaaagcttaa |
41404310 |
T |
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| Q |
110 |
gattgacaaacgatgataagattcacaagagtaggcatgctcgtatgttttcaagaagcaatttgtctatgcctaatcttgagtccttaggattcattct |
209 |
Q |
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| T |
41404311 |
gattgacaaatgatgataagattcacaagagtaggcatgctcgtatgttttcaagaagcaatttgtctatgcctaatcttgagtccttaggatttattct |
41404410 |
T |
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| Q |
210 |
acacgatgttcttattgatacaaatgaagcgaataatacagtggaaagtgataatgatgttcaacgtaaatcagtgagcgttcctttaaagattgataaa |
309 |
Q |
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| T |
41404411 |
acacgatgttcttattgatacaaatgaagcaaataatacagtggaaagtgataatgatgttcaacgtaaatcagtgagcgttcctttaaagattgataaa |
41404510 |
T |
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| Q |
310 |
tcacttgaacatttcaaagaggctgaagttgacgaaacggttgaagggagtgccagagatgtgaatcctagttcttt |
386 |
Q |
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| T |
41404511 |
tcacttgaacatttcaaagaggctgaagttgatgaaacggttgaagggagtgccagagatgtgaatcctagttcttt |
41404587 |
T |
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