View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18532_low_22 (Length: 368)
Name: NF18532_low_22
Description: NF18532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18532_low_22 |
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| [»] chr1 (1 HSPs) |
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| [»] scaffold0009 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 254; Significance: 1e-141; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 99 - 364
Target Start/End: Complemental strand, 17392718 - 17392453
Alignment:
| Q |
99 |
attctgcaaaatatatgctgcgaatcgaaaatcagcttcgcaagcttcatagtctataacttcaaattttgttagatgagacgaaacacattctggaaca |
198 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17392718 |
attctgcaaaatatatgttgcgaatcgaaaatcagcttcgcaagcttcatagtctataacttcaaattttgttagatgagacgaaacacattctggaaca |
17392619 |
T |
|
| Q |
199 |
tgatctggatattcccaatgctctatggttgttgaattcttcgcctgtcaatgtcaatccgagacaaaataggatttgtaaaaaatacttaatagaatag |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17392618 |
tgatctggatattcccaatgctctatggttgttgaattcttcgcctgtcaatgtcaatccgagacaaaataggatttgtaaaaaatacttaatagaatag |
17392519 |
T |
|
| Q |
299 |
aagaactggcaaaaattagcaactataatgaacaaacctttgcaatgttaagagtttgaagtttgg |
364 |
Q |
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||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17392518 |
aagaactggtaaaaattagtaactataatgaacaaacctttgcaatgttaagagtttgaagtttgg |
17392453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 99 - 368
Target Start/End: Complemental strand, 17384008 - 17383746
Alignment:
| Q |
99 |
attctgcaaaatatatgctgcgaatcgaaaatcagcttcgcaagcttcatagtctataacttcaaattttgttagatgagacgaaacacattctggaaca |
198 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
17384008 |
attctgcaaaatatatgttgcgaatcgaaaatcagcttcccaagcttcatagtgcataacttcaaattttgttagattagacgaaacacattctggaaca |
17383909 |
T |
|
| Q |
199 |
tgatctggatattcccaatgctctatggttgttgaattcttcgcctgtcaatgtcaatccgagacaaaataggatttgtaaaaaatacttaatagaatag |
298 |
Q |
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||||||||||||||||||||||||||| ||| |||||||| ||||||| ||||||||||||||||||||| ||| ||||||||| |||||| || |
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| T |
17383908 |
tgatctggatattcccaatgctctatgcttgctgaattctccgcctgt------caatccgagacaaaataggatatgt-aaaaatactcgatagaagag |
17383816 |
T |
|
| Q |
299 |
aagaactggcaaaaattagcaactataatgaacaaacctttgcaatgttaagagtttgaagtttgggaca |
368 |
Q |
| |
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|||||| | ||||||||| ||||||||| ||||||||||| |||| |||||||||||||| ||||||| |
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| T |
17383815 |
aagaacctgtaaaaattagtaactataataaacaaacctttagaatggtaagagtttgaagtatgggaca |
17383746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 104 - 368
Target Start/End: Complemental strand, 17377635 - 17377381
Alignment:
| Q |
104 |
gcaaaatatatgctgcgaatcgaaaatcagcttcgcaagcttcatagtctataacttcaaattttgttagatgagacgaaacacattctggaacatgatc |
203 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||| || ||||||||| ||| |||||||||||||||||||||||||||||||||||||| |
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| T |
17377635 |
gcaaaatatatgttgcgaatcgaaaatcagcttcgcaagcttcagagcctataactttaaagtttgttagatgagacgaaacacattctggaacatgatc |
17377536 |
T |
|
| Q |
204 |
tggatattcccaatgctctatggttgttgaattcttcgcctgtcaatgtcaatccgagacaaaataggatttgtaaaaaatacttaatagaatagaagaa |
303 |
Q |
| |
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||||||||||||| ||||||||||||||||| |||||| |||| ||||||||||||||||||||||| ||||||||| ||||||| | ||||| |
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| T |
17377535 |
tggatattcccaa---tctatggttgttgaattattcgcc------tgtcgatccgagacaaaataggatttgt-aaaaatactcaatagaagataagaa |
17377446 |
T |
|
| Q |
304 |
ctggcaaaaattagcaactataatgaacaaacctttgcaatgttaagagtttgaagtttgggaca |
368 |
Q |
| |
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| || | ||||||| ||||||||| ||||||||||| ||||| |||||||||||||||||||||| |
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| T |
17377445 |
cgggtataaattagtaactataataaacaaacctttacaatggtaagagtttgaagtttgggaca |
17377381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 99 - 223
Target Start/End: Complemental strand, 17380222 - 17380099
Alignment:
| Q |
99 |
attctgcaaaatatatgctgcgaatcgaaaatcagcttcgcaagcttcatagtctataacttcaaattttgttagatgagacgaaacacattctggaaca |
198 |
Q |
| |
|
||||||||||||||||| | || ||||||||||||||| | | ||||||||||||| || |||| |||||||||||| |||||||| ||| ||||| |
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| T |
17380222 |
attctgcaaaatatatgtcgtgattcgaaaatcagcttccaatggttcatagtctatatttt-aaatgatgttagatgagatgaaacacaatctagaaca |
17380124 |
T |
|
| Q |
199 |
tgatctggatattcccaatgctcta |
223 |
Q |
| |
|
|||| |||||||||||||||||||| |
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| T |
17380123 |
tgatatggatattcccaatgctcta |
17380099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 99 - 237
Target Start/End: Original strand, 13711906 - 13712044
Alignment:
| Q |
99 |
attctgcaaaatatatgctgcgaatcgaaaatcagcttcgcaagcttcatagtctataacttcaaattttgttagatgagacgaaacacattctggaaca |
198 |
Q |
| |
|
||||||||||||||||||||| ||||| ||||||||||| | ||||||||| ||||| | | | |||||| |||||| ||||||| || |||||| |
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| T |
13711906 |
attctgcaaaatatatgctgcaaatcggaaatcagcttccacaacttcatagtttataattcgacaagttgttaaatgagaggaaacacctttaggaaca |
13712005 |
T |
|
| Q |
199 |
tgatctggatattcccaatgctctatggttgttgaattc |
237 |
Q |
| |
|
||||| || ||||| ||| |||||| |||||||||||| |
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| T |
13712006 |
tgatcagggtattctcaaccctctatagttgttgaattc |
13712044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 99 - 235
Target Start/End: Complemental strand, 20112251 - 20112115
Alignment:
| Q |
99 |
attctgcaaaatatatgctgcgaatcgaaaatcagcttcgcaagcttcatagtctataacttcaaattttgttagatgagacgaaacacattctggaaca |
198 |
Q |
| |
|
||||||||||||||||| ||| ||| |||||||| |||| ||||||||||| ||| || | | || |||| ||| ||||| |||||||||| |||||| |
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| T |
20112251 |
attctgcaaaatatatgttgcaaattgaaaatcatgttcgaaagcttcatagcctacaatgttacatgttgtgagacgagacaaaacacattcaggaaca |
20112152 |
T |
|
| Q |
199 |
tgatctggatattcccaatgctctatggttgttgaat |
235 |
Q |
| |
|
| || ||| |||| ||||| |||| | |||||||||| |
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|
| T |
20112151 |
tcatatgggtatttccaattctctttagttgttgaat |
20112115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 100 - 217
Target Start/End: Original strand, 19969331 - 19969448
Alignment:
| Q |
100 |
ttctgcaaaatatatgctgcgaatcgaaaatcagcttcgcaagcttcatagtctataacttcaaattttgttagatgagacgaaacacattctggaacat |
199 |
Q |
| |
|
|||||||||||||| | ||| ||||||||||||||||| ||||| ||||| | ||| | | || |||| ||||||||| |||||||||| ||||||| |
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|
| T |
19969331 |
ttctgcaaaatatacgttgcaaatcgaaaatcagcttccacagcttgatagtgtgtaatattacatgttgtaagatgagacaaaacacattcgggaacat |
19969430 |
T |
|
| Q |
200 |
gatctggatattcccaat |
217 |
Q |
| |
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||| ||| |||| ||||| |
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|
| T |
19969431 |
gatatgggtatttccaat |
19969448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 228
Target Start/End: Complemental strand, 9619163 - 9619102
Alignment:
| Q |
167 |
ttgttagatgagacgaaacacattctggaacatgatctggatattcccaatgctctatggtt |
228 |
Q |
| |
|
|||||| |||||| ||||||||||| |||||||||| ||| |||| ||||| |||| ||||| |
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|
| T |
9619163 |
ttgttaaatgagatgaaacacattcaggaacatgatgtgggtatttccaatcctctttggtt |
9619102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 154; Significance: 1e-81; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 99 - 368
Target Start/End: Original strand, 26052745 - 26053009
Alignment:
| Q |
99 |
attctgcaaaatatatgctgcgaatcgaaaatcagcttcgcaagcttcatagtctataacttcaaattttgttagatgagacgaaacacattctggaaca |
198 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
26052745 |
attctgcaaaatatatgttgcgaatcgaatatcagtttcacaagcttcatagtctataacttcaaattttgttagatgagatgaaacacattctggaaca |
26052844 |
T |
|
| Q |
199 |
tgatctggatattcccaatgctctatggttgttgaattcttcgcctgtcaatgtcaatccgagacaaaataggatttgtaaaaaatacttaatagaatag |
298 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||| || ||||||||||| |||||||||||||||| ||||||||| ||||||| || |
|
|
| T |
26052845 |
tgatctggatattcccaatgctctatggttgttgaatacttctcc------tgtcaatccgatacaaaataggatttgt-aaaaatactcaatagaagag |
26052937 |
T |
|
| Q |
299 |
aagaactggcaaaa--attagcaactataatgaacaaacctttgcaatgttaagagtttgaagtttgggaca |
368 |
Q |
| |
|
||||||||| ||| |||| ||||||| | |||||||||||||||||| ||||| |||||||||||||| |
|
|
| T |
26052938 |
aagaactggtgaaatttttagtaactatattaaacaaacctttgcaatgtaaagagagtgaagtttgggaca |
26053009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 167 - 234
Target Start/End: Complemental strand, 15784880 - 15784813
Alignment:
| Q |
167 |
ttgttagatgagacgaaacacattctggaacatgatctggatattcccaatgctctatggttgttgaa |
234 |
Q |
| |
|
||||||||||||| || || |||| ||||||||||| || |||||||||| |||||||||||||||| |
|
|
| T |
15784880 |
ttgttagatgagaggagacgcatttaggaacatgatccgggtattcccaattctctatggttgttgaa |
15784813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 204
Target Start/End: Complemental strand, 40846 - 40809
Alignment:
| Q |
167 |
ttgttagatgagacgaaacacattctggaacatgatct |
204 |
Q |
| |
|
|||| |||||||||||||||||||| |||||||||||| |
|
|
| T |
40846 |
ttgtaagatgagacgaaacacattcaggaacatgatct |
40809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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