View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18532_low_24 (Length: 358)
Name: NF18532_low_24
Description: NF18532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18532_low_24 |
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Alignment Details
Target: chr3 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 13 - 342
Target Start/End: Complemental strand, 49094974 - 49094645
Alignment:
| Q |
13 |
aatatgaagcatgtaaattaattttacagtgagagatgaggtgtatttgccttcaggtcaacgttgggggacgagtaacatttcaccaaaagtgaagtaa |
112 |
Q |
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| T |
49094974 |
aatatgaagcatgtaaattaattttacagtgagagatgaggtgtatttgccttcaggtcaacgttgggggacgagtaacatttcaccaaaagtgaagtaa |
49094875 |
T |
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| Q |
113 |
aggatgaagaggagaagcttaattgaagatctacaatccattgtcaagctaggaaaaatatagcaaaaatgggttattaatattctatgtgtttatatat |
212 |
Q |
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| T |
49094874 |
aggatgaagaggagaagtttaattgaagatctacaatccattgtcaagctaggaaaaatatagcaaaaatgggttattaatattctatgtgtttatatat |
49094775 |
T |
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| Q |
213 |
aattaattgtacgtgtttatctaaaattggaattattaccaaaaatgagtttcgtcttttaattccatgctcctgcaacagttaattgtgaagttaatga |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |
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| T |
49094774 |
aattaattgtacgtgtttatctaaaattggaattattaccaaaaatgagtttcgtcttttaattccatgctcctgcaacagttagttgtgaaggtaatga |
49094675 |
T |
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| Q |
313 |
tgagttagcgttgtgataattctagaaact |
342 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
49094674 |
tgagttagcgttgtgataattctagaaact |
49094645 |
T |
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