View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18532_low_25 (Length: 354)
Name: NF18532_low_25
Description: NF18532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18532_low_25 |
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Alignment Details
Target: chr8 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 23 - 336
Target Start/End: Complemental strand, 592757 - 592446
Alignment:
| Q |
23 |
aacatggtagttgggggtgataaccttagacgacaattgaacatgaatggaggtagtaataactttatagtagatggtggtgatacatttttatcacaat |
122 |
Q |
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| T |
592757 |
aacatggtagttgggggtgataaccttagacgacaattgaaaatgaatggaggtagtaataactttatagtagatggtggtgatacattt--atcacaat |
592660 |
T |
|
| Q |
123 |
ttcagcagtcatgtttgcatcccaatggttatcaactccacactgttcatgaagccaaattcttaacgtaattgaaaataaaattttacacttcaacttg |
222 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
592659 |
gtcagcagtcatgtttgcatcccaatggttatcaactccacactgttcatgaagccaaattcttaacgtaattgaaaataaaattttacactgcaacttg |
592560 |
T |
|
| Q |
223 |
aattcattatcatattttgataagctggagaagctcttgaattctgtttcgacttgtcatgatcatggtataataatggtatcaaacttctgagacttga |
322 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
592559 |
aattcattatcatattttgataagctggagaagctcttgaattctgtttcgacttgacatgatcatggtataataatggtatcaaacttctgagacttga |
592460 |
T |
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| Q |
323 |
ttgttggttacttt |
336 |
Q |
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||||| |||||||| |
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| T |
592459 |
ttgtttgttacttt |
592446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 23 - 336
Target Start/End: Original strand, 579671 - 579982
Alignment:
| Q |
23 |
aacatggtagttgggggtgataaccttagacgacaattgaacatgaatggaggtagtaataactttatagtagatggtggtgatacatttttatcacaat |
122 |
Q |
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||||||||||||||||||||||| |||| |||||||||||| ||||| | ||||| ||||||||||||||||||| |||||||||||||| |||||||| |
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| T |
579671 |
aacatggtagttgggggtgataaacttaaacgacaattgaaaatgaaagcaggtaataataactttatagtagatagtggtgatacattt--atcacaat |
579768 |
T |
|
| Q |
123 |
ttcagcagtcatgt--------ttgcatcccaatggttatcaac-tccacactgttcatgaagccaaattcttaacgtaattgaaaataaaattttacac |
213 |
Q |
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||||| ||||||| ||||||| |||||||||| || |||||||| ||||||||||||||||||| ||||||||||||||||||| |
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| T |
579769 |
gtcagctgtcatgtactcatgtttgcatct-aatggttatccacctccacacttttcatgaagccaaattctt--------tgaaaataaaattttacac |
579859 |
T |
|
| Q |
214 |
ttcaacttgaattcattatcatattttgataagctggagaagctcttgaattctgtttcgacttgtcatgatcatggtataataatggtatcaaacttct |
313 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |||||||||||||||||||||||| ||| |
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| T |
579860 |
tgcaacttgaattcattatcatattttgataagctggagaagctcttgaattctgtttggacttgacatgaccatggtataataatggtatcaaacctct |
579959 |
T |
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| Q |
314 |
gagacttgattgttggttacttt |
336 |
Q |
| |
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|||||||||||||| ||| |||| |
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| T |
579960 |
gagacttgattgtttgtttcttt |
579982 |
T |
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