View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18532_low_26 (Length: 352)
Name: NF18532_low_26
Description: NF18532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18532_low_26 |
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| [»] chr5 (6 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 303; Significance: 1e-170; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 9 - 352
Target Start/End: Complemental strand, 17393119 - 17392776
Alignment:
| Q |
9 |
gaagaatatcaaaggttggtnnnnnnncagatagaaaaagatccatgctataacagcaaaggatgcttgggaaattatgctcaatacaaaggcgtagatc |
108 |
Q |
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|||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
17393119 |
gaagaaaatcaaaggttggtaaaaaaacagatagaaaaagatccatgctataacagcaaaggatgcatgggaaattatgctcaatacaaaggcgtagatc |
17393020 |
T |
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| Q |
109 |
caatttaacagacaaggtagcatggctcatcacgaaaattgagttaacaaaacaatgcaaagatgaaagtattggaagaccattgacttgaataagccta |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
17393019 |
caatttaacagacaaggtagcatggctcatcacgaaaattgagttaacaaaacaatgcaaagatgaaagtattggaaaaccattgacttgaataagccta |
17392920 |
T |
|
| Q |
209 |
tattgttcaaaccatcaaattcagtagtagttaatattgaaactaacaaaaacaccaggtatacatctaggaactgctgagattcagcttacatgtggga |
308 |
Q |
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||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17392919 |
tattgttcaaaccatcaaattcagtagtagtgaatatcgaaactaacaaaaacaccaggtatacatctaggaactgctgagattcagcttacatgtggga |
17392820 |
T |
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| Q |
309 |
gacattcttggacaggaggataaattttctaaaaattgagggct |
352 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17392819 |
gacattcttggacaggaggataaattttctaaaaattgagggct |
17392776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 131 - 335
Target Start/End: Complemental strand, 17377888 - 17377685
Alignment:
| Q |
131 |
tggctcatcacgaaaatt-gagttaacaaaacaatgcaaagatgaaagtattggaagaccattgacttgaataagcctatattgttcaaaccatcaaatt |
229 |
Q |
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||||||||| |||||||| ||| ||||||||||||||||||| ||||||||||| |||| | ||| || |||||||||||||||| ||||||||||||| |
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| T |
17377888 |
tggctcatcgcgaaaatttgagctaacaaaacaatgcaaagaagaaagtattggcagactactgatttatataagcctatattgttaaaaccatcaaatt |
17377789 |
T |
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| Q |
230 |
cagtagtagttaatattgaaactaacaaaaacaccaggtatacatctaggaactgctgagattcagcttacatgtgggagacattcttggacaggaggat |
329 |
Q |
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| T |
17377788 |
cagtagaagcaagtattgaaactaacgaaaacaccagacatacatctaggaactact--gaatcagcttacatgtgggagagatccttggacaggaggat |
17377691 |
T |
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| Q |
330 |
aaattt |
335 |
Q |
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|||||| |
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| T |
17377690 |
aaattt |
17377685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 179 - 352
Target Start/End: Complemental strand, 17384248 - 17384065
Alignment:
| Q |
179 |
attggaagaccattgacttgaataagcctatattgttcaaaccatcaaattcagtagtagttaatattgaaactaacaaaaacaccaggtatacatctag |
278 |
Q |
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||||| |||||||||| ||||||||||||||||||||| ||||||||||| |||||||||| ||||||| || ||||||||| ||| ||||||||||| | |
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| T |
17384248 |
attggtagaccattgatttgaataagcctatattgttcgaaccatcaaatccagtagtagtaaatattgtaagtaacaaaaatacccggtatacatctgg |
17384149 |
T |
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| Q |
279 |
gaactgctgagatt----------cagcttacatgtgggagacattcttggacaggaggataaattttctaaaaattgagggct |
352 |
Q |
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||||| ||||||| ||||||||||| |||||| || |||||||| ||||||||||||||||||||||||||||| |
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| T |
17384148 |
gaactattgagattcaaacaatgacagcttacatgagggagagatccttggacaagaggataaattttctaaaaattgagggct |
17384065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 51 - 123
Target Start/End: Complemental strand, 17389774 - 17389698
Alignment:
| Q |
51 |
ccatgctataacagcaaaggatgcttgggaaattatgctcaataca----aaggcgtagatccaatttaacagacaa |
123 |
Q |
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| T |
17389774 |
ccatgctataacagcaaaggaagcttggtaaattatgctcaatacatacaaagaagtagatccaatttaagagacaa |
17389698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 296 - 346
Target Start/End: Original strand, 13711792 - 13711842
Alignment:
| Q |
296 |
cttacatgtgggagacattcttggacaggaggataaattttctaaaaattg |
346 |
Q |
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||||||||| ||||| ||| |||||||||||||||||| ||||||||||| |
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| T |
13711792 |
cttacatgtaggagagattgttggacaggaggataaatcatctaaaaattg |
13711842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 202 - 270
Target Start/End: Complemental strand, 20049913 - 20049845
Alignment:
| Q |
202 |
aagcctatattgttcaaaccatcaaattcagtagtagttaatattgaaactaacaaaaacaccaggtat |
270 |
Q |
| |
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|||| |||||||||||||||||||||| ||| |||| |||| |||| |||||||||||||||||| |
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| T |
20049913 |
aagcttatattgttcaaaccatcaaatctagtggtagcgtatataaaaacaaacaaaaacaccaggtat |
20049845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 36 - 310
Target Start/End: Original strand, 26052462 - 26052732
Alignment:
| Q |
36 |
cagatagaaaaagatccatgctataacagcaaaggatgcttgggaaattatgctcaatacaaaggcgtagatccaatttaacagacaaggtagcatggct |
135 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||| |
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| T |
26052462 |
cagatagaaaaagatccatgctataacagcaaaggatccttgggaaattatgctcaatacaaaagtgtaaatccaatttaacagacaaggtagcatggct |
26052561 |
T |
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| Q |
136 |
catcacgaaaattgagttaacaaaacaatgcaaagatgaaagtattggaagaccattgacttgaataagcctatattgttcaaaccatcaaattcagtag |
235 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| | | |||| ||||||||||||||||||||||||||||||| |
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| T |
26052562 |
catcacgaaaattgagttaacaaaacaatgcacagatgaaagtattggcggaccattgattagtataaacctatattgttcaaaccatcaaattcagtag |
26052661 |
T |
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| Q |
236 |
tagttaatattgaaactaacaaaaacaccaggtatacatctaggaactgctgagattcagcttacatgtgggaga |
310 |
Q |
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||| ||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||| |
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| T |
26052662 |
tagcaaatattgaaactaacaaaaacacaaag----catctaggaactgctgagattcagcttacatgtgggaga |
26052732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 293 - 341
Target Start/End: Complemental strand, 15785065 - 15785017
Alignment:
| Q |
293 |
cagcttacatgtgggagacattcttggacaggaggataaattttctaaa |
341 |
Q |
| |
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|||||||||||||||||| ||| |||||||||||||||| | ||||||| |
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| T |
15785065 |
cagcttacatgtgggagagatttttggacaggaggataagtcttctaaa |
15785017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 283
Target Start/End: Original strand, 16257988 - 16258065
Alignment:
| Q |
205 |
cctatattgttcaaaccatcaaattcagtagtagttaatattgaaactaacaaaaacaccaggtatacatctaggaact |
283 |
Q |
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| T |
16257988 |
cctatattgttcaaaccgaaaattccggtagcagtgtatatagaaactaacaaaaacaccaggtat-catctaggaact |
16258065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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