View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18532_low_29 (Length: 334)

Name: NF18532_low_29
Description: NF18532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18532_low_29
NF18532_low_29
[»] chr2 (1 HSPs)
chr2 (13-309)||(19572313-19572597)


Alignment Details
Target: chr2 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 13 - 309
Target Start/End: Original strand, 19572313 - 19572597
Alignment:
Q  13 aatatgctggaatgttgttccatttgtacgtttgaggtatcatttcactttgatttacacttattagtgacttcattcaaccgttggtgatggttttctt 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19572313 aatatgctggaatgttgttccatttgtacgtttgaggtatcatttcactttgatttacacttattagtgacttcattcaaccgttggtgatggttttctt 19572412  T
Q  113 cattaaaatagtttctaattcttgatggttgatatcattatccttgggaatttgatgatgcaacttttgttagttaccgtttctggacagattgttggat 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                
T  19572413 cattaaaatagtttctaattcttgatggttgatatcattatccttgggaatttgatgatgcaacttttgttagttaccgtttctggac------------ 19572500  T
Q  213 aaagaagaataacgtgtttaaactaaggtgaagtccaattgatttaaacgttatggttgggccattacttttttcaccttgtgagtttctggcgtgc 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  19572501 aaagaagaataacgtgtttaaactaaggtgaagtccaattgatttaaacgttaaggttgggccattacttttttcaccttgtgagtttctggcgtgc 19572597  T

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