View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18532_low_3 (Length: 784)
Name: NF18532_low_3
Description: NF18532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18532_low_3 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 747; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 747; E-Value: 0
Query Start/End: Original strand, 16 - 770
Target Start/End: Original strand, 4618685 - 4619439
Alignment:
| Q |
16 |
atccaagtgttcacattagacacaataattaaagcataaaacgaaaaagaaatagccctgccacagtcaatctagaaccgagttctaggaacaaaaactg |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4618685 |
atccaagtgttcacattagacacaataattaaagcataaaacgaaaaagaaatagccctgccacagtcaatctagaaccgagttctaggaacaaaaactg |
4618784 |
T |
|
| Q |
116 |
atatgacagtgcagacttgacacttaacctgcaaaacaagtttactagacaaggtatagaaatactcaggaccaaagactaattattattgtaataacga |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4618785 |
atatgacagtgcagacttgacacttaacctgcaaaacaagtttactagacaaggtatagaaatactcaggaccaaagactaattattattgtaataacga |
4618884 |
T |
|
| Q |
216 |
cgatgcactttctatttaaatttagatcatcctgcacaattcacttctgcaatgccgatttagtgatactacctcctgcaccaggatccttcttcttcac |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4618885 |
cgatgcactttctatttaaatttagatcatcctgcacaattcacttctgcaatgccgatttagtgatactacctcctgcaccaggatccttcttcttcac |
4618984 |
T |
|
| Q |
316 |
agccttaatgactccaacagccacagttcgacgtatgtctctgacagcaaaacggccgagtgaaggataattagaaaaagtctctaccaccatgggcttg |
415 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4618985 |
agccttaatgactccaacagccactgttcgacgtatgtctctgacagcaaaacggccgagtgaaggataattagaaaaagtctctaccaccatgggcttg |
4619084 |
T |
|
| Q |
416 |
gtgggaatcatcttaataatgccagcatcaccattcttcaggaatttgggctcattctcaattaccttaccagaacacctgtcaatcttggctagaagct |
515 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4619085 |
gtgggaatcatcttaataatgccagcatcaccattcttcaggaatttgggctcattctcaattaccttaccagaacacctgtcaatcttggctagaagct |
4619184 |
T |
|
| Q |
516 |
tatcaaacttgacagcagtgtgggaggtgtggcaatgaagaacaggtgtatagccatttccaatctggccagggtgattcctgatgataacacatgagat |
615 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4619185 |
tatcaaacttgacagcagtgtgggaggtgtggcaatgaagaacaggtgtatagccatttccaatctggccagggtgattcctgatgataacacatgagat |
4619284 |
T |
|
| Q |
616 |
gaagttatctgcctccttggctgggtcatgcttggagtttgagacaacatagcctcgcttgagatgctcagcagacacattctcaacattaaatcccaca |
715 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4619285 |
gaagttatctgcctccttggctgggtcatgcttggagtttgagacaacatagcctcgcttgagatgctcagcagacacattctcaacattaaatcccaca |
4619384 |
T |
|
| Q |
716 |
ttgtcaccaggaagggcctcagtgagatttgtatggtgcatttgcacagacttta |
770 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
4619385 |
ttgtcaccaggaagggcctcagtgagatttgtatggtccatttgcacagacttta |
4619439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 329 - 727
Target Start/End: Complemental strand, 4788431 - 4788036
Alignment:
| Q |
329 |
ccaacagccacagttcgacgtatgtctctgacagcaaaacggccgagtgaaggataattagaaaaagtctctaccaccatgggcttggtgggaatcatct |
428 |
Q |
| |
|
||||||||||||||| || | | || || |||| ||||| |||| |||| |||||| | | |||| |||||||||||| ||||||||||||| ||||| |
|
|
| T |
4788431 |
ccaacagccacagtttgatgcaagtatcggacaacaaaatggccaagtggaggatatagatagaaaggctctaccaccataggcttggtgggaaccatct |
4788332 |
T |
|
| Q |
429 |
taataatgccagcatcaccattcttcaggaatttgggctcattctcaattaccttaccagaacacctgtcaatcttggctagaagcttatcaaacttgac |
528 |
Q |
| |
|
||||| ||| ||||||||||||||| |||| ||| | ||||||||||| ||||||| |||||| |||| | ||||| |||||| | ||| |
|
|
| T |
4788331 |
caataagaccatcatcaccattcttcaagaatgcaggcctctcctcaattacctaaccagaatgattgtcaaccttgcaaataagctcatcaaattcgac |
4788232 |
T |
|
| Q |
529 |
agcagtgtgggaggtgtggcaatgaagaacaggtgtatagccatttccaatctggccagggtgattcctgatgataacacatgagatg--aagttatctg |
626 |
Q |
| |
|
|||| | |||||||||||||| ||||||| ||| |||||||| ||| ||||||| ||||||||||| |||||||| |||||||||| |||| ||| | |
|
|
| T |
4788231 |
agcaatttgggaggtgtggcagtgaagaataggcgtatagcctttttcaatctgtccagggtgatttgtgatgata--acatgagatgtaaagtaatcgg |
4788134 |
T |
|
| Q |
627 |
cctccttggctgggtcatgcttggagtttgagacaacatagcctcgcttgagatgctcagcagacacattctcaacattaaatcccacattgtcaccagg |
726 |
Q |
| |
|
|||||||||| |||| | ||| |||| |||||||||||||| ||||||||| | |||||| || || ||||||||||||||| |||||||||| |
|
|
| T |
4788133 |
cctccttggccacatcatccatggtgttttagacaacatagccttgcttgagatccatagcagaaac---gtcgacattaaatcccacaatgtcaccagg |
4788037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 329 - 727
Target Start/End: Original strand, 4296749 - 4297144
Alignment:
| Q |
329 |
ccaacagccacagttcgacgtatgtctctgacagcaaaacggccgagtgaaggataattagaaaaagtctctaccaccatgggcttggtgggaatcatct |
428 |
Q |
| |
|
|||||||||||| || || | | |||| |||| ||||||||| ||||| |||| | ||| |||| |||||||||||| | || |||||||||||||| |
|
|
| T |
4296749 |
ccaacagccacaatttgatgcaagtcttggacaacaaaacggctgagtggaggagatagagagaaaggctctaccaccatagactcggtgggaatcatct |
4296848 |
T |
|
| Q |
429 |
taataatgccagcatcaccattcttcaggaatt-tgggctcattctcaattaccttaccagaacacctgtcaatcttggctagaagcttatcaaacttga |
527 |
Q |
| |
|
|||||| | | ||||||||||||| |||| ||||| | |||||||||| |||| |||||| ||||| |||| | ||||| | |||| |||| |
|
|
| T |
4296849 |
taataagacaattgtcaccattcttcaagaatggtgggcgc-ttctcaattatcttatgagaacaatagtcaaccttgtaaataagctcagcaaatttga |
4296947 |
T |
|
| Q |
528 |
cagcagtgtgggaggtgtggcaatgaagaacaggtgtatagccatttccaatctggccagggtgattcctgatgataacacatgagatg--aagttatct |
625 |
Q |
| |
|
||| | |||||||||||||||| ||||||| |||||||||||| | | ||||||||| ||||||||| |||||||| |||||||||| |||| | |
|
|
| T |
4296948 |
caggaatgtgggaggtgtggcagtgaagaataggtgtatagccttcttcaatctggctagggtgatttgtgatgata--acatgagatgtaaagtgagtg |
4297045 |
T |
|
| Q |
626 |
gcctccttggctgggtcatgcttggagtttgagacaacatagcctcgcttgagatgctcagcagacacattctcaacattaaatcccacattgtcaccag |
725 |
Q |
| |
|
|||||||||||||||||| || || ||||||| ||||||||||| ||||||||| | |||||| ||||| |||||||||| |||| ||||||||| |
|
|
| T |
4297046 |
acctccttggctgggtcatcctcggggtttgaggcaacatagccttgcttgagatccgtagcagaaacatt---gacattaaatctcacaatgtcaccag |
4297142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 626 - 729
Target Start/End: Original strand, 1846095 - 1846198
Alignment:
| Q |
626 |
gcctccttggctgggtcatgcttggagtttgagacaacatagcctcgcttgagatgctcagcagacacattctcaacattaaatcccacattgtcaccag |
725 |
Q |
| |
|
|||||| | |||||| || ||| ||||| |||| |||||||||||||| |||||| || ||||||||||||| |||||||||||||||| ||||||||| |
|
|
| T |
1846095 |
gcctccatagctgggccacgctgggagtgtgaggcaacatagcctcgcctgagatccttagcagacacattcgtaacattaaatcccacaatgtcaccag |
1846194 |
T |
|
| Q |
726 |
gaag |
729 |
Q |
| |
|
|||| |
|
|
| T |
1846195 |
gaag |
1846198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 243; Significance: 1e-134; HSPs: 15)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 16 - 742
Target Start/End: Original strand, 43043995 - 43044722
Alignment:
| Q |
16 |
atccaagtgttcacattagacacaataattaaagcataaaacgaaaa-agaaatagccctgccacagtcaatctagaaccgagttctaggaacaaaaact |
114 |
Q |
| |
|
||||||||||||| | ||||||||| ||||||||||||||| |||| ||| |||| ||||||| ||| |||||||||| |||||| ||||| || || |
|
|
| T |
43043995 |
atccaagtgttcagactagacacaacaattaaagcataaaaacaaaacagatatagtactgccaccgtcgatctagaacccagttctgagaacacaagct |
43044094 |
T |
|
| Q |
115 |
--gatatgacagtgcagacttgacacttaacctgcaaaacaagtttactagacaaggtatagaaatactcaggaccaaagactaattattattgtaataa |
212 |
Q |
| |
|
|| |||| ||||||||||||||||||| || ||||||||| |||||| || ||||||||||| |||||||||||| | ||||| ||||||| |
|
|
| T |
43044095 |
aagagatgaaggtgcagacttgacacttaatatgaaaaacaagtaaactagaagagaaatagaaatactaaggaccaaagaccatttatt---gtaataa |
43044191 |
T |
|
| Q |
213 |
cgacgatgcactttctatttaaatttagatcatcctgcacaattcacttctgc---aatgccgatttagtgatactacctcctgcaccaggatccttctt |
309 |
Q |
| |
|
| | ||| ||| | | ||||| |||||||||||| | ||||||||| | ||||| || || || || |||| ||| ||||||||||| |
|
|
| T |
43044192 |
ctatgatatgcttcccaagtaaat--agatcatcctgctcggttcacttcttcttcaatgctgacttggtctgcttaagtcctccactgggatccttctt |
43044289 |
T |
|
| Q |
310 |
cttcacagccttaatgactccaacagccacagttcgacgtatgtctctgacagcaaaacggccgagtgaaggataattagaaaaagtctctaccaccatg |
409 |
Q |
| |
|
|| ||||||||| ||||| ||||||||||||||| |||| |||||||| ||||||||||||||||||| |||||| | ||| |||||||| ||||||||| |
|
|
| T |
43044290 |
ctccacagccttgatgaccccaacagccacagtttgacgcatgtctctaacagcaaaacggccgagtggaggatattcagagaaagtctcaaccaccatg |
43044389 |
T |
|
| Q |
410 |
ggcttggtgggaatcatcttaataatgccagcatcaccattcttcaggaatttgggctcattctcaattaccttaccagaacacctgtcaatcttggcta |
509 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| |||||||||| |||||||||||| |||||||| |||||||||||| ||| |||||||| | | |
|
|
| T |
43044390 |
ggcttggtgggaatcatcttaataataccagcatcgccattcttcaagaatttgggctccttctcaatctccttaccagaacgcctatcaatcttagtaa |
43044489 |
T |
|
| Q |
510 |
gaagcttatcaaacttgacagcagtgtgggaggtgtggcaatgaagaacaggtgtatagccatttccaatctggccagggtgattcctgatgataacaca |
609 |
Q |
| |
|
||||| | |||||||||||||| |||||||||||||||| | ||||||||| | ||||||||||||||||||||||||||||||| | ||||| ||| |
|
|
| T |
43044490 |
caagctcagcaaacttgacagcaatgtgggaggtgtggcagtcaagaacaggggcatagccatttccaatctggccagggtgattcattatgat--cact |
43044587 |
T |
|
| Q |
610 |
tgagatg--aagttatctgcctccttggctgggtcatgcttggagtttgagacaacatagcctcgcttgagatgctcagcagacacattctcaacattaa |
707 |
Q |
| |
|
||||||| |||||| | ||||||||||||||||||| ||||||||||||| ||||||| || |||||||||| || | ||| ||||||| ||||||| |
|
|
| T |
43044588 |
tgagatgtaaagttagcagcctccttggctgggtcatccttggagtttgaggcaacatacccacgcttgagatccttaacagcaacattcttgacattaa |
43044687 |
T |
|
| Q |
708 |
atcccacattgtcaccaggaagggcctcagtgaga |
742 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||| |
|
|
| T |
43044688 |
atcccacattgtcaccaggaagggcctctgtgaga |
43044722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 235; E-Value: 1e-129
Query Start/End: Original strand, 32 - 742
Target Start/End: Complemental strand, 43067980 - 43067269
Alignment:
| Q |
32 |
tagacacaataattaaagcataaaacgaaaa-agaaatagccctgccacagtcaatctagaaccgagttctaggaacaaaaact--gatatgacagtgca |
128 |
Q |
| |
|
||||||||| ||||||||||||||| |||| ||| | ||| ||||||| ||| |||||||||| |||||| |||||||| || || |||| ||||| |
|
|
| T |
43067980 |
tagacacaacaattaaagcataaaaataaaacagatagagcgctgccaccgtcgatctagaacccagttctgagaacaaaagctaagagatgaaggtgca |
43067881 |
T |
|
| Q |
129 |
gacttgacacttaacctgcaaaacaagtttactagacaaggtatagaaatactcaggaccaaagactaattattattgtaataacgacgatgcactttct |
228 |
Q |
| |
|
|||||||||||||| || ||||||||| ||||||| || ||||||||||| |||||||||||| | ||||| |||||||| | ||| ||| | |
|
|
| T |
43067880 |
gacttgacacttaatatgaaaaacaagtaaactagactagaaatagaaatactaaggaccaaagaccatttatt---gtaataactatgatatgcttccc |
43067784 |
T |
|
| Q |
229 |
atttaaatttagatcatcctgcacaattcacttctgc---aatgccgatttagtgatactacctcctgcaccaggatccttcttcttcacagccttaatg |
325 |
Q |
| |
|
| || || |||||||||||| | ||||||||| | ||||| || || || || |||| ||| ||||||||||||| |||||| || ||| |
|
|
| T |
43067783 |
aagtagat--agatcatcctgctcggttcacttcttcttcaatgctgacttggtctgcttaagtcctccactgggatccttcttctccacagctttgatg |
43067686 |
T |
|
| Q |
326 |
actccaacagccacagttcgacgtatgtctctgacagcaaaacggccgagtgaaggataattagaaaaagtctctaccaccatgggcttggtgggaatca |
425 |
Q |
| |
|
|| ||||||||||||||| |||| |||||||| ||||||||||||||||||| |||||| | ||| |||||||| ||||||||||||||||||||||||| |
|
|
| T |
43067685 |
acgccaacagccacagtttgacgcatgtctctaacagcaaaacggccgagtggaggatattcagagaaagtctcaaccaccatgggcttggtgggaatca |
43067586 |
T |
|
| Q |
426 |
tcttaataatgccagcatcaccattcttcaggaatttgggctcattctcaattaccttaccagaacacctgtcaatcttggctagaagcttatcaaactt |
525 |
Q |
| |
|
|||||||||| |||||||| |||||||||| |||||||||||| |||||||| |||||||||||| ||| |||||||| | | ||||| | ||||||| |
|
|
| T |
43067585 |
tcttaataataccagcatcgccattcttcaagaatttgggctccttctcaatctccttaccagaacgcctatcaatcttagtaacaagctcagcaaactt |
43067486 |
T |
|
| Q |
526 |
gacagcagtgtgggaggtgtggcaatgaagaacaggtgtatagccatttccaatctggccagggtgattcctgatgataacacatgagatg--aagttat |
623 |
Q |
| |
|
||||||| |||||||||||||||| | ||||||||| | ||||||||||||||||||||||||||||||| | ||||| ||| ||||||| |||||| |
|
|
| T |
43067485 |
gacagcaatgtgggaggtgtggcagtcaagaacaggggcatagccatttccaatctggccagggtgattcattatgat--cacttgagatgtaaagttag |
43067388 |
T |
|
| Q |
624 |
ctgcctccttggctgggtcatgcttggagtttgagacaacatagcctcgcttgagatgctcagcagacacattctcaacattaaatcccacattgtcacc |
723 |
Q |
| |
|
| ||||||||||||||||||| ||||||||||||| ||||||| || |||||||||| || | ||| ||||||| ||||||||||||||||||||||| |
|
|
| T |
43067387 |
cagcctccttggctgggtcatccttggagtttgaggcaacatacccacgcttgagatccttaacagcaacattcttgacattaaatcccacattgtcacc |
43067288 |
T |
|
| Q |
724 |
aggaagggcctcagtgaga |
742 |
Q |
| |
|
|||||||||||| |||||| |
|
|
| T |
43067287 |
aggaagggcctctgtgaga |
43067269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 299 - 742
Target Start/End: Original strand, 43083123 - 43083566
Alignment:
| Q |
299 |
ggatccttcttcttcacagccttaatgactccaacagccacagttcgacgtatgtctctgacagcaaaacggccgagtgaaggataattagaaaaagtct |
398 |
Q |
| |
|
||||||||||||| |||||| || ||||| ||||||||||||||| |||| |||||||| ||||||||||| ||||||| |||||| | ||| ||||||| |
|
|
| T |
43083123 |
ggatccttcttctccacagctttgatgacgccaacagccacagtttgacgcatgtctctaacagcaaaacgaccgagtggaggatattcagagaaagtct |
43083222 |
T |
|
| Q |
399 |
ctaccaccatgggcttggtgggaatcatcttaataatgccagcatcaccattcttcaggaatttgggctcattctcaattaccttaccagaacacctgtc |
498 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |||||||||||| |||||||| |||||||||||| ||| || |
|
|
| T |
43083223 |
caaccaccatgggcttggtgggaatcatcttaataataccagcatcgccattcttcaagaatttgggctccttctcaatctccttaccagaacgcctatc |
43083322 |
T |
|
| Q |
499 |
aatcttggctagaagcttatcaaacttgacagcagtgtgggaggtgtggcaatgaagaacaggtgtatagccatttccaatctggccagggtgattcctg |
598 |
Q |
| |
|
|||||| | | ||||| | |||||||||||||| |||||||||||||||| | ||||||||| | ||||||||||||||||||||||||||||||| || |
|
|
| T |
43083323 |
aatcttagtaacaagctcagcaaacttgacagcaatgtgggaggtgtggcagtcaagaacaggggcatagccatttccaatctggccagggtgattcatg |
43083422 |
T |
|
| Q |
599 |
atgataacacatgagatg--aagttatctgcctccttggctgggtcatgcttggagtttgagacaacatagcctcgcttgagatgctcagcagacacatt |
696 |
Q |
| |
|
||||| ||| ||||||| |||||| | || |||||||||||||||| ||||||||||||| ||||||| || |||||||||| || | ||| ||||| |
|
|
| T |
43083423 |
atgat--cacttgagatgtaaagttagcagcttccttggctgggtcatccttggagtttgaggcaacatacccacgcttgagatccttaacagcaacatt |
43083520 |
T |
|
| Q |
697 |
ctcaacattaaatcccacattgtcaccaggaagggcctcagtgaga |
742 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
43083521 |
cttgacattaaatcccacattgtcaccaggaagggcctctgtgaga |
43083566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 239 - 756
Target Start/End: Complemental strand, 38138921 - 38138404
Alignment:
| Q |
239 |
agatcatcctgcacaattcacttctgcaatgccgatttagtgatactacctcctgcaccaggatccttcttcttcacagccttaatgactccaacagcca |
338 |
Q |
| |
|
||||||||||||| |||||||||| ||||||| | |||| ||| ||||| ||||| ||||||||||||||||||| || | |||||||||||||||| |
|
|
| T |
38138921 |
agatcatcctgcaagattcacttcttcaatgcctacttagcgatcttaccttctgcatgaggatccttcttcttcacaaccatgatgactccaacagcca |
38138822 |
T |
|
| Q |
339 |
cagttcgacgtatgtctctgacagcaaaacggccgagtgaaggataattagaaaaagtctctaccaccatgggcttggtgggaatcatcttaataatgcc |
438 |
Q |
| |
|
||||| |||| ||||||||||||||||||||||| |||| ||||||| |||||||| |||||||||||||| |||||||||||||||||||| || || |
|
|
| T |
38138821 |
cagtttgacgcatgtctctgacagcaaaacggccaagtggaggataagtagaaaaatcctctaccaccatggacttggtgggaatcatcttaacaacacc |
38138722 |
T |
|
| Q |
439 |
agcatcaccattcttcaggaatttgggctcattctcaattaccttaccagaacacctgtcaatcttggctagaagcttatcaaacttgacagcagtgtgg |
538 |
Q |
| |
|
||||||||||||||||| |||||||||||| ||||| ||| || ||||||| ||||||||| ||||| | ||||||| |||||||||||| | |||| |
|
|
| T |
38138721 |
agcatcaccattcttcaagaatttgggctccttctcgatttccaaaccagaaaacctgtcaaacttggtaacaagcttagcaaacttgacaggaacgtgg |
38138622 |
T |
|
| Q |
539 |
gaggtgtggcaatgaagaacaggtgtatagccatttccaatctggccagggtgattcctgatgataacacatgagatgaagttatctgcctccttggctg |
638 |
Q |
| |
|
||||||||||| | |||| |||||||||||||||| |||| |||||| |||||| |||||||||||| || | || ||| | |||||| |||||| |
|
|
| T |
38138621 |
gaggtgtggcagtccagaataggtgtatagccattttgaatccggccagtttgattcgtgatgataacacgggatgtaaatttagcagcctccgtggctg |
38138522 |
T |
|
| Q |
639 |
ggtcatgcttggagtttgagacaacatagcctcgcttgagatgctcagcagacacattctcaacattaaatcccacattgtcaccaggaagggcctcagt |
738 |
Q |
| |
|
||||||||||||||| |||| |||||||||||||| ||||| || | ||||| ||| || |||||||||||||||| |||||||||||||||||||| | |
|
|
| T |
38138521 |
ggtcatgcttggagtctgaggcaacatagcctcgccggagatccttaacagacccatgctgaacattaaatcccacaatgtcaccaggaagggcctcatt |
38138422 |
T |
|
| Q |
739 |
gagatttgtatggtgcat |
756 |
Q |
| |
|
||| ||| ||||||||| |
|
|
| T |
38138421 |
gagcttttcatggtgcat |
38138404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 299 - 742
Target Start/End: Original strand, 3300013 - 3300456
Alignment:
| Q |
299 |
ggatccttcttcttcacagccttaatgactccaacagccacagttcgacgtatgtctctgacagcaaaacggccgagtgaaggataattagaaaaagtct |
398 |
Q |
| |
|
||||||||||||| ||||||||| ||||| |||||||||||||| |||| || || |||||||| |||||||| |||| |||||| | ||| ||||||| |
|
|
| T |
3300013 |
ggatccttcttctccacagccttgatgacaccaacagccacagtctgacgcatatccctgacagcgaaacggccaagtggaggatactcagagaaagtct |
3300112 |
T |
|
| Q |
399 |
ctaccaccatgggcttggtgggaatcatcttaataatgccagcatcaccattcttcaggaatttgggctcattctcaattaccttaccagaacacctgtc |
498 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |||||||||||| |||||||| |||| ||||||| |||||| |
|
|
| T |
3300113 |
caaccaccatgggcttggtgggaatcatcttaataataccagcatcaccgttcttcaagaatttgggctccttctcaatctcctttccagaacgcctgtc |
3300212 |
T |
|
| Q |
499 |
aatcttggctagaagcttatcaaacttgacagcagtgtgggaggtgtggcaatgaagaacaggtgtatagccatttccaatctggccagggtgattcctg |
598 |
Q |
| |
|
|||||| | | ||||| | |||| ||||||||| |||||||||||||||| | ||||||||| | ||||||||||||||||||||||||||||||| | |
|
|
| T |
3300213 |
aatcttagtaacaagctcagcaaatttgacagcaatgtgggaggtgtggcagtcaagaacaggggcatagccatttccaatctggccagggtgattcata |
3300312 |
T |
|
| Q |
599 |
atgataacacatgagatg--aagttatctgcctccttggctgggtcatgcttggagtttgagacaacatagcctcgcttgagatgctcagcagacacatt |
696 |
Q |
| |
|
||||| ||| ||||||| |||||| | ||||||||||| ||||||| ||||||||||||| ||||||| || |||||||||| || | ||| || || |
|
|
| T |
3300313 |
atgat--cacttgagatgtaaagttagcagcctccttggcagggtcatccttggagtttgaggcaacataaccacgcttgagatccttaacagcaacgtt |
3300410 |
T |
|
| Q |
697 |
ctcaacattaaatcccacattgtcaccaggaagggcctcagtgaga |
742 |
Q |
| |
|
|| |||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
3300411 |
cttaacattaaatcccacattgtcaccaggaagagcctcagtgaga |
3300456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 200; E-Value: 1e-108
Query Start/End: Original strand, 124 - 736
Target Start/End: Complemental strand, 45984861 - 45984260
Alignment:
| Q |
124 |
gtgcagacttgacacttaacctgcaaaacaagtttactagacaaggtatagaaatactcaggaccaaagactaattattattgtaataacgacgatgcac |
223 |
Q |
| |
|
|||||||||| |||||||| ||||||||||||||||||||| || ||||||||||| |||||||||||||| |||| |||||||| ||||| | |
|
|
| T |
45984861 |
gtgcagacttcacacttaatctgcaaaacaagtttactagaggagaaatagaaatactaaggaccaaagactatttatg---gtaataacaacgataga- |
45984766 |
T |
|
| Q |
224 |
tttctatttaaatttagatcatcctgcacaattcacttctgcaatgccgatttagtgatactacctcctgcaccaggatccttcttcttcacagccttaa |
323 |
Q |
| |
|
|||| | | ||||||||| |||||| |||| || | |||| ||| |||||||| ||||||||||| ||||||||||||||||||||||||| | |
|
|
| T |
45984765 |
tttcgctaga----tagatcatcttgcacagttcattttttcaatatcgacttagtgattttacctcctgcagcaggatccttcttcttcacagccttga |
45984670 |
T |
|
| Q |
324 |
tgactccaacagccacagttcgacgtatgtctctgacagcaaaacggccgagtgaaggataattagaaaaagtctctaccaccatgggcttggtgggaat |
423 |
Q |
| |
|
|||||||||||||||||||| || | |||||||||| ||||||||||||||| |||||| ||| |||| |||||||||||| |||||||||||||| |
|
|
| T |
45984669 |
tgactccaacagccacagtttgatgccagtctctgacaacaaaacggccgagtggaggatatagagagaaaggctctaccaccataggcttggtgggaat |
45984570 |
T |
|
| Q |
424 |
catcttaataatgccagcatcaccattcttcaggaatttgggctcattctcaattaccttaccagaacacctgtcaatcttggctagaagcttatcaaac |
523 |
Q |
| |
|
|||||||||||| |||| ||||||| || ||| ||||||||||| |||||||| ||| ||||||||||||||||| ||||| | ||||| | ||||| |
|
|
| T |
45984569 |
catcttaataataccagtatcaccactcatcaaaaatttgggctccctctcaatttcctcaccagaacacctgtcaaccttggaaataagctcagcaaac |
45984470 |
T |
|
| Q |
524 |
ttgacagcagtgtgggaggtgtggcaatgaagaacaggtgtatagccatttccaatctggccagggtgattcctgatgataacacatgagatgaagttat |
623 |
Q |
| |
|
||||||||| |||||||||||||||| | |||||||||||| |||||||||| ||||||||||||||||||| | ||||||||| || | |||| | |
|
|
| T |
45984469 |
ttgacagcaatgtgggaggtgtggcagtcaagaacaggtgtgtagccatttcgaatctggccagggtgattcgtaatgataacaagagatgtaaagtgag |
45984370 |
T |
|
| Q |
624 |
ctgcctccttggctgggtcatgcttggagtttgagacaacatagcctcgcttgagatgctcagcagacacattctcaacattaaatcccacattgtcacc |
723 |
Q |
| |
|
| ||||| ||||||||| || |||||||||| ||||||| ||| ||||||||| | ||||| || || |||||||||||||||| ||||||| |
|
|
| T |
45984369 |
cggcctctaccgctgggtcaccctcggagtttgaggcaacataaccttgcttgagatccctagcagcaacgtt---aacattaaatcccacaatgtcacc |
45984273 |
T |
|
| Q |
724 |
aggaagggcctca |
736 |
Q |
| |
|
||||||||||||| |
|
|
| T |
45984272 |
aggaagggcctca |
45984260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 184; E-Value: 4e-99
Query Start/End: Original strand, 297 - 768
Target Start/End: Complemental strand, 7891955 - 7891484
Alignment:
| Q |
297 |
caggatccttcttcttcacagccttaatgactccaacagccacagttcgacgtatgtctctgacagcaaaacggccgagtgaaggataattagaaaaagt |
396 |
Q |
| |
|
|||||||||| ||||||||| |||| |||||||||| |||||||||| |||| |||||||||||||||||||| || ||||||||||| || |||||| |
|
|
| T |
7891955 |
caggatccttattcttcacatccttgatgactccaatagccacagtttgacgcatgtctctgacagcaaaacgaccaagtgaaggatatgcagtaaaagt |
7891856 |
T |
|
| Q |
397 |
ctctaccaccatgggcttggtgggaatcatcttaataatgccagcatcaccattcttcaggaatttgggctcattctcaattaccttaccagaacacctg |
496 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |||||||||||| ||||||| | | | || | |||| |
|
|
| T |
7891855 |
ctctaccaccatgggcttggtgggaatcatcttaataataccagcatcgccattcttcaagaatttgggctccttctcaaattcaacattagtattcctg |
7891756 |
T |
|
| Q |
497 |
tcaatcttggctagaagcttatcaaacttgacagcagtgtgggaggtgtggcaatgaagaacaggtgtatagccatttccaatctggccagggtgattcc |
596 |
Q |
| |
|
|||| |||| | |||||| |||||||||||||| |||||||||||||||| | |||| ||||||||||||||||| |||||||||||| |||||| |
|
|
| T |
7891755 |
tcaaacttgctaacaagcttggcaaacttgacagcaatgtgggaggtgtggcagtcgagaataggtgtatagccatttctaatctggccaggatgattca |
7891656 |
T |
|
| Q |
597 |
tgatgataacacatgagatg--aagttatctgcctccttggctgggtcatgcttggagtttgagacaacatagcctcgcttgagatgctcagcagacaca |
694 |
Q |
| |
|
||||||| |||||||||| || | | | |||||| | |||||| || |||||||||||||| |||||||||||||| |||||| || |||||||||| |
|
|
| T |
7891655 |
agatgata--acatgagatgtaaattcagcagcctccatagctgggccacgcttggagtttgaggcaacatagcctcgcctgagatccttagcagacaca |
7891558 |
T |
|
| Q |
695 |
ttctcaacattaaatcccacattgtcaccaggaagggcctcagtgagatttgtatggtgcatttgcacagactt |
768 |
Q |
| |
|
||| ||| |||||||||||| ||||||||||||| ||| ||||||| | ||||||||| | ||||||||| |
|
|
| T |
7891557 |
ttcgtaacgttaaatcccacaatgtcaccaggaagagcccgagtgagagcttcatggtgcatctccacagactt |
7891484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 161; E-Value: 2e-85
Query Start/End: Original strand, 299 - 715
Target Start/End: Complemental strand, 43077589 - 43077173
Alignment:
| Q |
299 |
ggatccttcttcttcacagccttaatgactccaacagccacagttcgacgtatgtctctgacagcaaaacggccgagtgaaggataattagaaaaagtct |
398 |
Q |
| |
|
|||||||||| || ||||||| | ||||| ||||||||||||||| |||| |||| |||| || ||||||||| |||| |||||| | ||| ||||||| |
|
|
| T |
43077589 |
ggatccttctactccacagccgtgatgacaccaacagccacagtttgacgcttgtccctgatagtaaaacggccaagtggaggatattcagagaaagtct |
43077490 |
T |
|
| Q |
399 |
ctaccaccatgggcttggtgggaatcatcttaataatgccagcatcaccattcttcaggaatttgggctcattctcaattaccttaccagaacacctgtc |
498 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| ||||||| ||| ||||||||| ||| || |
|
|
| T |
43077489 |
caaccaccatgggcttggtgggaatcatcttaataataccagcatcaccattcatcaggaatttgggcttcgtctcaatcaccataccagaacgcctatc |
43077390 |
T |
|
| Q |
499 |
aatcttggctagaagcttatcaaacttgacagcagtgtgggaggtgtggcaatgaagaacaggtgtatagccatttccaatctggccagggtgattcctg |
598 |
Q |
| |
|
|||||||| | ||||| ||||||||||||| | ||||| |||||||||| ||||||||||||| |||||||||| |||||| ||||||||||||| || |
|
|
| T |
43077389 |
aatcttggtaacaagctcatcaaacttgacaagaatgtggaaggtgtggcagtgaagaacaggtgcatagccattttcaatcttgccagggtgattcatg |
43077290 |
T |
|
| Q |
599 |
atgataacacatgagatg--aagttatctgcctccttggctgggtcatgcttggagtttgagacaacatagcctcgcttgagatgctcagcagacacatt |
696 |
Q |
| |
|
| | | || ||||||| |||||| | ||||||||||||||||||| | ||||||| ||| |||||||||| | |||||||| || | || || || |
|
|
| T |
43077289 |
acg--acgacttgagatgtaaagttagcggcctccttggctgggtcatccatggagttagaggcaacatagccactcttgagatccttaacatcaacgtt |
43077192 |
T |
|
| Q |
697 |
ctcaacattaaatcccaca |
715 |
Q |
| |
|
|||||||||||||| |||| |
|
|
| T |
43077191 |
ctcaacattaaatctcaca |
43077173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 323 - 563
Target Start/End: Original strand, 50911744 - 50911984
Alignment:
| Q |
323 |
atgactccaacagccacagttcgacgtatgtctctgacagcaaaacggccgagtgaaggataattagaaaaagtctctaccaccatgggcttggtgggaa |
422 |
Q |
| |
|
||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| | || |||||||||||||||| ||||||||||||||||| |
|
|
| T |
50911744 |
atgactccaacagccacagtttgacgcatgtctctgacagcaaaacggccgagtgaaggaaatttggaaaaagtctctaccaacatgggcttggtgggaa |
50911843 |
T |
|
| Q |
423 |
tcatcttaataatgccagcatcaccattcttcaggaatttgggctcattctcaattaccttaccagaacacctgtcaatcttggctagaagcttatcaaa |
522 |
Q |
| |
|
|||||| ||||| ||||| ||||||||||||| |||||||||||| ||||||||| || | | || ||| || |||||| | ||||||| |||| |
|
|
| T |
50911844 |
tcatctcaataacaccagcgtcaccattcttcaagaatttgggctccttctcaatttccacaaaataatgcctaacattcttggtaacaagcttagcaaa |
50911943 |
T |
|
| Q |
523 |
cttgacagcagtgtgggaggtgtggcaatgaagaacaggtg |
563 |
Q |
| |
|
|||||||||| ||| ||| |||||||||||||||||||||| |
|
|
| T |
50911944 |
cttgacagcaatgttggacgtgtggcaatgaagaacaggtg |
50911984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 305 - 735
Target Start/End: Complemental strand, 40035691 - 40035258
Alignment:
| Q |
305 |
ttcttcttcacagccttaatgactccaacagccacagttcgacgtatgtctctgacagcaaaacggccgagtgaaggataattagaaaaagtctctacca |
404 |
Q |
| |
|
|||||| ||||| |||| |||||||||||||| ||||||||||| |||||||||| | ||||||| | ||||||| ||| || | | || |||||||| |
|
|
| T |
40035691 |
ttcttcgtcacatccttgatgactccaacagcgacagttcgacgcgtgtctctgactgtaaaacgggcaagtgaagaatattttgcattaggctctacca |
40035592 |
T |
|
| Q |
405 |
ccatgggcttggtgggaatcatcttaataatgccagcatcaccattcttcaggaatttgggctcattctcaattaccttaccagaacacctgtcaatctt |
504 |
Q |
| |
|
||||||||||||| |||||||| | || || || |||||||||||| || |||||||||||| | ||||| || | | ||| |||||||| ||| |
|
|
| T |
40035591 |
ccatgggcttggttggaatcatttcaacaagccccccatcaccattctccaagaatttgggctcctgctcaagcacaaaattacaacgcctgtcaagctt |
40035492 |
T |
|
| Q |
505 |
ggctagaagcttatcaaacttgacagcagtgtgggaggtgtggcaatgaagaacaggtgtatagccatttccaatctggc---cagggtgattcctgatg |
601 |
Q |
| |
|
| | || | || | ||| |||||| | |||||||||||||||| | || || ||||||||||||| | ||| | | |||||||||| ||| |
|
|
| T |
40035491 |
gttaacaaacctagcgaacctgacaggaatgtgggaggtgtggcagtcaacaataggtgtatagccaagtggaatttttccatcagggtgattaatgaca |
40035392 |
T |
|
| Q |
602 |
ataacacatgagatgaagttatctgcctccttggctgggtcatgcttggagtttgagacaacatagcctcgcttgagatgctcagcagacacattctcaa |
701 |
Q |
| |
|
|||| | || | || ||| | || ||| ||||||| |||| |||||||||||| ||||||| ||| ||||||||| || | |||||| |||| || |
|
|
| T |
40035391 |
ataatatgagaagtaaatttaacggcttccatggctggatcatcgttggagtttgaggcaacataaccttgcttgagatccttaacagacatgttcttaa |
40035292 |
T |
|
| Q |
702 |
cattaaatcccacattgtcaccaggaagggcctc |
735 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| |
|
|
| T |
40035291 |
cattaaatcccacaatgtcaccaggaagggcctc |
40035258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 16 - 165
Target Start/End: Complemental strand, 7892290 - 7892138
Alignment:
| Q |
16 |
atccaagtgttcacattagacacaataattaaagcataaaa-cgaaaaagaaatagccctgccacagtcaatctagaaccgagttctaggaacaaaaact |
114 |
Q |
| |
|
|||||||| |||||| ||||||||||||| | ||||||||| | |||||||||| | |||||||| | | |||||||| | |||||||||||||||| || |
|
|
| T |
7892290 |
atccaagtattcacactagacacaataatcatagcataaaaacaaaaaagaaatggacctgccaccgccgatctagaagccagttctaggaacaaaagct |
7892191 |
T |
|
| Q |
115 |
gata--tgacagtgcagacttgacacttaacctgcaaaacaagtttactagac |
165 |
Q |
| |
|
| || |||| |||||||| | ||||||||||| |||| |||||||||||||| |
|
|
| T |
7892190 |
gctagatgacggtgcagacatcacacttaacctacaaagcaagtttactagac |
7892138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 637 - 742
Target Start/End: Original strand, 50912034 - 50912139
Alignment:
| Q |
637 |
tgggtcatgcttggagtttgagacaacatagcctcgcttgagatgctcagcagacacattctcaacattaaatcccacattgtcaccaggaagggcctca |
736 |
Q |
| |
|
|||||||| |||||||||||| ||| |||||||||| ||||| || || ||||||||||| |||||||||||||||| |||||||||||| ||||||| |
|
|
| T |
50912034 |
tgggtcatcgttggagtttgaggcaatatagcctcgccggagatccttagaagacacattcttaacattaaatcccacaatgtcaccaggaatggcctca |
50912133 |
T |
|
| Q |
737 |
gtgaga |
742 |
Q |
| |
|
||||| |
|
|
| T |
50912134 |
atgaga |
50912139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #13
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 32 - 194
Target Start/End: Original strand, 43082855 - 43083020
Alignment:
| Q |
32 |
tagacacaataattaaagcataaaacgaaaa-agaaatagccctgccacagtcaatctagaaccgagttctaggaacaaaaact--gatatgacagtgca |
128 |
Q |
| |
|
||||||||| ||||||||||||||| |||| ||| | ||| ||||||| ||| |||||||||| |||||| |||||||| || || |||| ||||| |
|
|
| T |
43082855 |
tagacacaacaattaaagcataaaaacaaaacagatagagcgctgccaccgtcgatctagaacccagttctgagaacaaaagctaagagatgaaggtgca |
43082954 |
T |
|
| Q |
129 |
gacttgacacttaacctgcaaaacaagtttactagacaaggtatagaaatactcaggaccaaagac |
194 |
Q |
| |
|
|||||||||||||| || ||||||||| ||||||| || ||||||||||| |||||| ||||| |
|
|
| T |
43082955 |
gacttgacacttaatatgaaaaacaagtaaactagacgagaaatagaaatactaaggacccaagac |
43083020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 46 - 157
Target Start/End: Original strand, 3299761 - 3299875
Alignment:
| Q |
46 |
aaagcataaa-acgaaaaagaaatagccctgccacagtcaatctagaaccgagttctaggaacaaaaact--gatatgacagtgcagacttgacacttaa |
142 |
Q |
| |
|
|||||||||| ||| |||||||||||||||||||| ||| ||| |||||| |||| | ||||||||| | || ||||| ||||||||||||||||||| |
|
|
| T |
3299761 |
aaagcataaacacggaaaagaaatagccctgccaccgtcgatcaagaacccagttttgggaacaaaagttgcgagatgacggtgcagacttgacacttaa |
3299860 |
T |
|
| Q |
143 |
cctgcaaaacaagtt |
157 |
Q |
| |
|
| | |||||||||| |
|
|
| T |
3299861 |
tccgaaaaacaagtt |
3299875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #15
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 19 - 146
Target Start/End: Complemental strand, 38139132 - 38139003
Alignment:
| Q |
19 |
caagtgttcacattagacacaataattaaagcataaaa-cgaaaaagaaatagccctgccacagtcaatctagaaccgagttctaggaacaaaaactg-- |
115 |
Q |
| |
|
||||| |||||| ||||||| |||| | ||||||||| ||||||||||| ||| |||||| ||||||||||| | |||||| ||||||||| ||| |
|
|
| T |
38139132 |
caagtattcacacaagacacagtaatcatagcataaaaacgaaaaagaaacggcc-tgccaccatcaatctagaagccagttcttggaacaaaagctgtg |
38139034 |
T |
|
| Q |
116 |
atatgacagtgcagacttgacacttaacctg |
146 |
Q |
| |
|
| ||||| ||||||||||||||||||||||| |
|
|
| T |
38139033 |
agatgacggtgcagacttgacacttaacctg |
38139003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 285 - 735
Target Start/End: Original strand, 16348412 - 16348862
Alignment:
| Q |
285 |
tacctcctgcaccaggatccttcttcttcacagccttaatgactccaacagccacagttcgacgtatgtctctgacagcaaaacggccgagtgaaggata |
384 |
Q |
| |
|
|||||| | ||| |||||||||||| |||||| || |||| ||||| |||||||||| || | | ||||||||| ||||||||||||||||||||| |
|
|
| T |
16348412 |
tacctctttcactaggatccttcttgttcacaaccaagatgattccaatagccacagtttgatgcgtatctctgacaataaaacggccgagtgaaggata |
16348511 |
T |
|
| Q |
385 |
attagaaaaagtctctaccaccatgggcttggtgggaatcatcttaataatgccagcatcaccattcttcaggaatttgggctcattctcaattacctta |
484 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| ||||||| |||||||||||| ||| |||||| ||| |
|
|
| T |
16348512 |
ttcagaaaaagtctctaccaccatgggcttggtgggaatcatctgaataatgccaccatcacctttcttcaagaatttgggctccttcacaattatcttg |
16348611 |
T |
|
| Q |
485 |
ccagaacacctgtcaatcttggctagaagcttatcaaacttgacagcagtgtgggaggtgtggcaatgaagaacaggtgtatagccatttccaatctggc |
584 |
Q |
| |
|
|||||| ||||||| | |||||| ||||||||| |||||||||||||| ||| |||||||||||| | ||||||||||||||| || ||| |||| |||| |
|
|
| T |
16348612 |
ccagaaaacctgtctaccttggcaagaagcttagcaaacttgacagcaatgtaggaggtgtggcagttaagaacaggtgtataacccttttcaatttggc |
16348711 |
T |
|
| Q |
585 |
cagggtgattcctgatgataacacatgagatg--aagttatctgcctccttggctgggtcatgcttggagtttgagacaacatagcctcgcttgagatgc |
682 |
Q |
| |
|
||||||||||| |||||||||| ||||||| |||||| |||||||||||||||| |||||||||||||||| ||||||||||||| ||||||| |
|
|
| T |
16348712 |
cagggtgattcgtgatgataact--tgagatgtaaagttaatggcctccttggctgggtgatgcttggagtttgaggcaacatagcctcggctgagatgt |
16348809 |
T |
|
| Q |
683 |
tcagcagacacattctcaacattaaatcccacattgtcaccaggaagggcctc |
735 |
Q |
| |
|
|| ||||||||||||||||| ||||| |||||| ||||||||||||||||| |
|
|
| T |
16348810 |
gcatcagacacattctcaacagcaaatctcacattatcaccaggaagggcctc |
16348862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 296 - 742
Target Start/End: Original strand, 4230741 - 4231187
Alignment:
| Q |
296 |
ccaggatccttcttcttcacagccttaatgactccaacagccacagttcgacgtatgtctctgacagcaaaacggccgagtgaaggataattagaaaaag |
395 |
Q |
| |
|
||||| |||||||||| |||| |||| || || ||||||||||||||| | || || |||||||||||||||||||| |||| |||||| | ||| |||| |
|
|
| T |
4230741 |
ccaggttccttcttctccacacccttgataaccccaacagccacagtttgccgcatatctctgacagcaaaacggccaagtggaggatattcagagaaag |
4230840 |
T |
|
| Q |
396 |
tctctaccaccatgggcttggtgggaatcatcttaataatgccagcatcaccattcttcaggaatttgggctcattctcaattaccttaccagaacacct |
495 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||| ||||| || |||||||||||| ||| |
|
|
| T |
4230841 |
tctcaaccaccatgggcttggtgggaatcatcttaataataccagcatctccattcttcaggaatttaggctccttctcgatctccttaccagaacgcct |
4230940 |
T |
|
| Q |
496 |
gtcaatcttggctagaagcttatcaaacttgacagcagtgtgggaggtgtggcaatgaagaacaggtgtatagccatttccaatctggccagggtgattc |
595 |
Q |
| |
|
||||||||| | | ||||| | |||||||||| ||| |||||||||||||||| | ||||||||| | ||| ||||||||||||||||||||||||||| |
|
|
| T |
4230941 |
gtcaatcttagtaacaagctcagcaaacttgactgcaatgtgggaggtgtggcagtcaagaacaggggcataaccatttccaatctggccagggtgattc |
4231040 |
T |
|
| Q |
596 |
ctgatgataacacatgaga--tgaagttatctgcctccttggctgggtcatgcttggagtttgagacaacatagcctcgcttgagatgctcagcagacac |
693 |
Q |
| |
|
|||| || ||| ||||| |||||||| | ||||||||||||||||||| ||||| ||||||| ||||||| || |||||||||| || |||| || |
|
|
| T |
4231041 |
atgataat--cacctgagatgtgaagttagcagcctccttggctgggtcatccttggtgtttgaggcaacataaccacgcttgagatccttgacagaaac |
4231138 |
T |
|
| Q |
694 |
attctcaacattaaatcccacattgtcaccaggaagggcctcagtgaga |
742 |
Q |
| |
|
||||| |||||||||||||||||||||||| ||||| |||||||||||| |
|
|
| T |
4231139 |
attcttaacattaaatcccacattgtcaccgggaagtgcctcagtgaga |
4231187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 323 - 431
Target Start/End: Complemental strand, 19965504 - 19965396
Alignment:
| Q |
323 |
atgactccaacagccacagttcgacgtatgtctctgacagcaaaacggccgagtgaaggataattagaaaaagtctctaccaccatgggcttggtgggaa |
422 |
Q |
| |
|
|||||||||| |||||||||| |||| |||||||| || |||||| |||||||| |||||| | ||| |||| |||||||||||| ||||||| ||||| |
|
|
| T |
19965504 |
atgactccaaaagccacagtttgacgcatgtctctagcaacaaaacagccgagtggaggatattgagagaaagcctctaccaccataggcttggcgggaa |
19965405 |
T |
|
| Q |
423 |
tcatcttaa |
431 |
Q |
| |
|
||||||||| |
|
|
| T |
19965404 |
tcatcttaa |
19965396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 520 - 728
Target Start/End: Complemental strand, 19965335 - 19965127
Alignment:
| Q |
520 |
aaacttgacagcagtgtgggaggtgtggcaatgaagaacaggtgtatagccatttccaatctggccagggtgattcctgatgataacacatgagatgaag |
619 |
Q |
| |
|
||||| ||||||| |||||||||||||||| | ||||||||||||||||||| || |||| |||||||| || | ||||||| | | || | ||| |
|
|
| T |
19965335 |
aaactcgacagcaatgtgggaggtgtggcagtcaagaacaggtgtatagccagtttgaatcatgccagggtcctttgtaatgataagataagatgtaaag |
19965236 |
T |
|
| Q |
620 |
ttatctgcctccttggctgggtcatgcttggagtttgagacaacatagcctcgcttgagatgctcagcagacacattctcaacattaaatcccacattgt |
719 |
Q |
| |
|
| | | ||| || |||||||||||| |||||||||||| ||||||| ||| ||| ||||| || ||||| |||| ||| |||| ||||||||| || |
|
|
| T |
19965235 |
tcagcggcccccatggctgggtcattgttggagtttgaggcaacataacctggctggagatccttagcagcaacatcctcgacatctaatcccacaaagt |
19965136 |
T |
|
| Q |
720 |
caccaggaa |
728 |
Q |
| |
|
||||||||| |
|
|
| T |
19965135 |
caccaggaa |
19965127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 133; Significance: 1e-68; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 133; E-Value: 1e-68
Query Start/End: Original strand, 298 - 742
Target Start/End: Complemental strand, 7530261 - 7529817
Alignment:
| Q |
298 |
aggatccttcttcttcacagccttaatgactccaacagccacagttcgacgtatgtctctgacagcaaaacggccgagtgaaggataattagaaaaagtc |
397 |
Q |
| |
|
|||||||||||||| ||||||||| ||||| |||||||| |||||| |||| ||||| |||||||||||||| || || | |||||| | || ||| ||| |
|
|
| T |
7530261 |
aggatccttcttctccacagccttgatgacaccaacagcaacagtttgacgcatgtccctgacagcaaaacgtccaagaggaggatattcagcaaaggtc |
7530162 |
T |
|
| Q |
398 |
tctaccaccatgggcttggtgggaatcatcttaataatgccagcatcaccattcttcaggaatttgggctcattctcaattaccttaccagaacacctgt |
497 |
Q |
| |
|
|| |||||||||||||||||||||| ||||||||| || ||||||||||||||||||| ||| |||||||| |||||||| |||||||||| | ||||| |
|
|
| T |
7530161 |
tcaaccaccatgggcttggtgggaaccatcttaatgataccagcatcaccattcttcaagaacttgggctccttctcaatctccttaccagatcgcctgt |
7530062 |
T |
|
| Q |
498 |
caatcttggctagaagcttatcaaacttgacagcagtgtgggaggtgtggcaatgaagaacaggtgtatagccatttccaatctggccagggtgattcct |
597 |
Q |
| |
|
||||||||| | ||| | | ||||||| |||||| |||| ||||||||||||| || || |||| ||| |||||||||||||| |||||||| ||| | |
|
|
| T |
7530061 |
caatcttggtaacaagttcagcaaacttcacagcaatgtgagaggtgtggcaatcgagcactggtgcatatccatttccaatctgtccagggtggttcat |
7529962 |
T |
|
| Q |
598 |
gatgataacacatgagatgaagttatctgcctccttggctgggtcatgcttggagtttgagacaacatagcctcgcttgagatgctcagcagacacattc |
697 |
Q |
| |
|
|||||| || || ||||||| | || ||||| || ||||||| ||||||||| || |||| | || |||||||||| || ||| |||||| |
|
|
| T |
7529961 |
gatgatgacttgggaagtgaagttggcagcttcctttgcagggtcatccttggagttggatgcaacgaaaccacgcttgagatccttcacagcaacattc |
7529862 |
T |
|
| Q |
698 |
tcaacattaaatcccacattgtcaccaggaagggcctcagtgaga |
742 |
Q |
| |
|
| |||||| ||||| |||||||| || ||||| || ||||||||| |
|
|
| T |
7529861 |
ttaacattgaatccgacattgtctcctggaagagcttcagtgaga |
7529817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 299 - 603
Target Start/End: Complemental strand, 7520723 - 7520419
Alignment:
| Q |
299 |
ggatccttcttcttcacagccttaatgactccaacagccacagttcgacgtatgtctctgacagcaaaacggccgagtgaaggataattagaaaaagtct |
398 |
Q |
| |
|
||||||||||||| ||||||||| ||||| |||||||| |||||| |||| ||||| ||||| |||||||| || || | |||||| | || || |||| |
|
|
| T |
7520723 |
ggatccttcttctccacagccttgatgacaccaacagcaacagtttgacgcatgtccctgacggcaaaacgtccaagaggaggatattcagcgaaggtct |
7520624 |
T |
|
| Q |
399 |
ctaccaccatgggcttggtgggaatcatcttaataatgccagcatcaccattcttcaggaatttgggctcattctcaattaccttaccagaacacctgtc |
498 |
Q |
| |
|
| |||||||||||||||||||||| ||||||||| || ||||||||||| ||||||| ||| |||||||| |||||||| |||||||||| | |||||| |
|
|
| T |
7520623 |
caaccaccatgggcttggtgggaaccatcttaatgataccagcatcaccgttcttcaagaacttgggctccttctcaatctccttaccagatcgcctgtc |
7520524 |
T |
|
| Q |
499 |
aatcttggctagaagcttatcaaacttgacagcagtgtgggaggtgtggcaatgaagaacaggtgtatagccatttccaatctggccagggtgattcctg |
598 |
Q |
| |
|
|||||||| | ||| | | ||||||| |||||| |||| ||||||||||||| || || |||| ||| |||||||||||||| |||||||| ||| || |
|
|
| T |
7520523 |
aatcttggtaacaagttcagcaaacttcacagcaatgtgagaggtgtggcaatcgagcactggtgcatatccatttccaatctgtccagggtggttcatg |
7520424 |
T |
|
| Q |
599 |
atgat |
603 |
Q |
| |
|
||||| |
|
|
| T |
7520423 |
atgat |
7520419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 100; Significance: 5e-49; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 100; E-Value: 5e-49
Query Start/End: Original strand, 323 - 606
Target Start/End: Original strand, 33860137 - 33860420
Alignment:
| Q |
323 |
atgactccaacagccacagttcgacgtatgtctctgacagcaaaacggccgagtgaaggataattagaaaaagtctctaccaccatgggcttggtgggaa |
422 |
Q |
| |
|
||||| |||| |||||||||| |||| ||||||| || ||||||||||||||| |||||||| || ||| |||||||||||| ||||||||||||| |
|
|
| T |
33860137 |
atgacgccaaaagccacagtttgacgcctgtctctcgcaacaaaacggccgagtggaggataataagcgaaatcctctaccaccataggcttggtgggaa |
33860236 |
T |
|
| Q |
423 |
tcatcttaataatgccagcatcaccattcttcaggaatttgggctcattctcaattaccttaccagaacacctgtcaatcttggctagaagcttatcaaa |
522 |
Q |
| |
|
||||||||||| ||||||||||| |||||| ||||| ||||| ||||||||| |||||||| || ||| ||||| |||||| | ||||| | |||| |
|
|
| T |
33860237 |
tcatcttaatagcagcagcatcaccactcttcaagaattcaggctccttctcaatttccttaccataaaaccagtcaaccttggcaataagctcaacaaa |
33860336 |
T |
|
| Q |
523 |
cttgacagcagtgtgggaggtgtggcaatgaagaacaggtgtatagccatttccaatctggccagggtgattcctgatgataac |
606 |
Q |
| |
|
| |||||||| ||||||||||||||| | ||||| ||||||| |||| |||| |||| ||||||||| ||| |||||||||| |
|
|
| T |
33860337 |
catgacagcaacgtgggaggtgtggcagtcaagaataggtgtaaagccttttctaatcaggccagggtcatttgtgatgataac |
33860420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 305 - 455
Target Start/End: Original strand, 16231466 - 16231616
Alignment:
| Q |
305 |
ttcttcttcacagccttaatgactccaacagccacagttcgacgtatgtctctgacagcaaaacggccgagtgaaggataattagaaaaagtctctacca |
404 |
Q |
| |
|
|||||||| |||| | | ||||||||||||||||||||| |||| |||||||||||||||||||| || || |||||||| | | | | ||| |||| |
|
|
| T |
16231466 |
ttcttctttacagacattatgactccaacagccacagtttgacgcatgtctctgacagcaaaacgaccaagggaaggatattcattgataccctccacca |
16231565 |
T |
|
| Q |
405 |
ccatgggcttggtgggaatcatcttaataatgccagcatcaccattcttca |
455 |
Q |
| |
|
|||| ||||| | ||||||||||||| ||| || |||||||||||||||| |
|
|
| T |
16231566 |
ccataggcttcataggaatcatcttaacaattcctgcatcaccattcttca |
16231616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 323 - 372
Target Start/End: Original strand, 34690143 - 34690192
Alignment:
| Q |
323 |
atgactccaacagccacagttcgacgtatgtctctgacagcaaaacggcc |
372 |
Q |
| |
|
|||| |||||||||||||||| |||| ||||||||||||||||||||||| |
|
|
| T |
34690143 |
atgattccaacagccacagtttgacgcatgtctctgacagcaaaacggcc |
34690192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 323 - 372
Target Start/End: Original strand, 34712555 - 34712604
Alignment:
| Q |
323 |
atgactccaacagccacagttcgacgtatgtctctgacagcaaaacggcc |
372 |
Q |
| |
|
|||| |||||||||||||||| |||| ||||||||||||||||||||||| |
|
|
| T |
34712555 |
atgattccaacagccacagtttgacgcatgtctctgacagcaaaacggcc |
34712604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 511 - 567
Target Start/End: Original strand, 34690331 - 34690387
Alignment:
| Q |
511 |
aagcttatcaaacttgacagcagtgtgggaggtgtggcaatgaagaacaggtgtata |
567 |
Q |
| |
|
||||||| |||||||||||||||||||||||| |||||| | ||| ||||| ||||| |
|
|
| T |
34690331 |
aagcttagcaaacttgacagcagtgtgggaggcgtggcagtcaaggacaggagtata |
34690387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 511 - 567
Target Start/End: Original strand, 34712743 - 34712799
Alignment:
| Q |
511 |
aagcttatcaaacttgacagcagtgtgggaggtgtggcaatgaagaacaggtgtata |
567 |
Q |
| |
|
||||||| |||||||||||||||||||||||| |||||| | ||| ||||| ||||| |
|
|
| T |
34712743 |
aagcttagcaaacttgacagcagtgtgggaggcgtggcagtcaaggacaggagtata |
34712799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University