View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18532_low_30 (Length: 311)
Name: NF18532_low_30
Description: NF18532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18532_low_30 |
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| [»] scaffold0077 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 299
Target Start/End: Original strand, 39604684 - 39604993
Alignment:
| Q |
1 |
tttgctgagtcgcttaagtctgtgttgtttttgctttcttcgttttatgttgctgtctgtaaggttcctttgtgttacttgtttttct-----------t |
89 |
Q |
| |
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||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | |
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| T |
39604684 |
tttgctgagtcacttaagtctgtgttgtttttgctttcttcgttttatgctgctgtctgtaaggttcctttgtgttacttgtttttctttgttggttctt |
39604783 |
T |
|
| Q |
90 |
gtttgtatataagtggcagattgcctatttgtaggtttggttttgggtttttggaggcctgttttgctgccggaggcgctcccttttgtttagtgtgata |
189 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39604784 |
gtttgtatataagtggcggattgcctatttgtaggtttggttttgggtttttggagacctgttttgctgccggaggcgctcccttttgtttagtgtgata |
39604883 |
T |
|
| Q |
190 |
ataaatttttgctgtcatagaaaaaagtgccgccattgttaacctcgttgtgtgtttgctttgattattgattgttcttgtttcaactagtaagttccta |
289 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39604884 |
ataaatttttgctgtcatagaaaaaagtgccgccattgttaacctcactgtgtgtttgctttgattattgattgttcttgtttcaactagtaagttccta |
39604983 |
T |
|
| Q |
290 |
agaacatttt |
299 |
Q |
| |
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|||||||||| |
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| T |
39604984 |
agaacatttt |
39604993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 297
Target Start/End: Complemental strand, 40793661 - 40793345
Alignment:
| Q |
1 |
tttgctgagtcgcttaagtctgtgttgtttttgctttcttcgttttatgttgctgtctgtaaggttcctttgtgttacttgtttttctt----------- |
89 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||| |||| ||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
40793661 |
tttgctgagtcgcttaagtctgtgttgtttttgctatctttgttt-atgctgctgtctgtaaggttcctttgtgttacttgtttttctttgttggttctt |
40793563 |
T |
|
| Q |
90 |
gtttgtatataagtggcagattgcctatttgtaggtttggttttgggtttttggaggcctgttttgctgccggaggcgctcccttttgtttagtgtgata |
189 |
Q |
| |
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||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |
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| T |
40793562 |
gtttgtatataagtggcggattgcatatttgtaggtttggttttgggtttttggaggcctgatttgctgctggaggcgctcccttttgtttagtgtgata |
40793463 |
T |
|
| Q |
190 |
ataaatttttgctgtcatag--------aaaaaagtgccgcc--attgttaacctcgttgtgtgtttgctttgattattgattgttcttgtttcaactag |
279 |
Q |
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||||||||||| |||||||| |||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
40793462 |
ataaatttttgttgtcatagaaaagaaaaaaaaagtgccgccatattgttaacctcactgtgtgtttgctttgattattgattgttcttgtttcaactag |
40793363 |
T |
|
| Q |
280 |
taagttcctaagaacatt |
297 |
Q |
| |
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|||||||||||||||||| |
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| T |
40793362 |
taagttcctaagaacatt |
40793345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0077 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: scaffold0077
Description:
Target: scaffold0077; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 299
Target Start/End: Complemental strand, 53484 - 53167
Alignment:
| Q |
1 |
tttgctgagtcgcttaagtctgtgttgtttttgctttcttcgttttatgttgctgtctgtaaggttcctttgtgttacttgtttttctt----------- |
89 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| ||||||| |||||||| |||||||||||||||| |||||||||||||||||||||| |
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| T |
53484 |
tttgctgagtcgcttaagtctgtgttattttttctttctttgttttatgctgctgtctgtaaggttactttgtgttacttgtttttctttgttggttctt |
53385 |
T |
|
| Q |
90 |
gtttgtatataagtggcagattgcctatttgtaggtttggttttgggtttttggaggcctgttttgctgccggaggcgctcccttttgtttagtgtgata |
189 |
Q |
| |
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|||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| |
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| T |
53384 |
gtttatatataagtggtggattgcctatttgtaggtttggttttgggtttttggaggcctgttttgctgttggaggcgctctcttttgtttagtgtgata |
53285 |
T |
|
| Q |
190 |
ataaatttttgctgtcatag--------aaaaaagtgccgccattgttaacctcgttgtgtgtttgctttgattattgattgttcttgtttcaactagta |
281 |
Q |
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|||||| ||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53284 |
ataaatatttgctgtcatagaaaagaaaaaaaaagtgccgccattgttaacctcacagtgtgtttgctttgattattgattgttcttgtttcaactagta |
53185 |
T |
|
| Q |
282 |
agttcctaagaacatttt |
299 |
Q |
| |
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|||||||||||||||||| |
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| T |
53184 |
agttcctaagaacatttt |
53167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 263 - 299
Target Start/End: Complemental strand, 34818751 - 34818715
Alignment:
| Q |
263 |
gttcttgtttcaactagtaagttcctaagaacatttt |
299 |
Q |
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||||||||||||||| ||||||||||||||||||||| |
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| T |
34818751 |
gttcttgtttcaactggtaagttcctaagaacatttt |
34818715 |
T |
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