View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18532_low_31 (Length: 309)
Name: NF18532_low_31
Description: NF18532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18532_low_31 |
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Alignment Details
Target: chr2 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 291
Target Start/End: Complemental strand, 41832382 - 41832092
Alignment:
| Q |
1 |
actatatatggtctatgataaattcatgtatgttatgataactttgtgagtgaagaaaaataataagaaaaagtaaaaagacaaggccatggagtcaaag |
100 |
Q |
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| T |
41832382 |
actatatatggtctatgataaattcatgtatgttatgataaccttgtgagtgaagaaaaataataagaaaaagtaaaaagacaaggccatggagtcaaag |
41832283 |
T |
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| Q |
101 |
acaagacgaccaccaatatgtctcaaataatattatgtctctctccaaaccgtttcttactaccaactcttttttctcactctttcctatattgtaagca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41832282 |
acaagacgaccaccaatatgtctcaaataatattatgtctctctccaaaccgtttcttactaccaactcttttttctcactctttcctatattgtaagca |
41832183 |
T |
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| Q |
201 |
aacaccataaccatcacaatcatcatcatgttcattattaatttatttcctccttatgaagcttctttctaatctttctccctatacctag |
291 |
Q |
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| T |
41832182 |
aacaccataaccatcacaatcatcatcatgttcattattaatttatttcctccttatgaagcttctttctaatctttctccctatacctag |
41832092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 106
Target Start/End: Complemental strand, 24360407 - 24360323
Alignment:
| Q |
22 |
attcatgtatgttatgataactttgtgagtgaagaaaaataataagaaaaagtaaaaaga---caaggccatggagtcaaagacaaga |
106 |
Q |
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||||||||||| ||||| || ||||||||||||||||| |||| ||||| ||||||| ||||||||||||||||||||||||| |
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| T |
24360407 |
attcatgtatg--atgattaccttgtgagtgaagaaaaaaaata-gaaaattgaaaaagaaaacaaggccatggagtcaaagacaaga |
24360323 |
T |
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