View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18532_low_33 (Length: 306)

Name: NF18532_low_33
Description: NF18532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18532_low_33
NF18532_low_33
[»] chr6 (18 HSPs)
chr6 (21-272)||(28185883-28186134)
chr6 (21-272)||(28227443-28227693)
chr6 (21-272)||(28325968-28326219)
chr6 (21-230)||(28297181-28297390)
chr6 (21-230)||(28514683-28514892)
chr6 (21-267)||(28181612-28181858)
chr6 (21-233)||(28235096-28235306)
chr6 (21-225)||(28243332-28243536)
chr6 (96-219)||(28097959-28098082)
chr6 (21-75)||(28503801-28503855)
chr6 (96-184)||(26849290-26849378)
chr6 (95-172)||(31288895-31288972)
chr6 (96-172)||(26623861-26623937)
chr6 (96-172)||(26729838-26729914)
chr6 (95-142)||(26959746-26959793)
chr6 (127-184)||(25483637-25483694)
chr6 (96-141)||(26975572-26975617)
chr6 (96-184)||(25539121-25539209)
[»] scaffold0019 (1 HSPs)
scaffold0019 (21-272)||(57735-57987)
[»] scaffold0038 (4 HSPs)
scaffold0038 (21-272)||(27941-28191)
scaffold0038 (21-233)||(35258-35468)
scaffold0038 (21-225)||(43494-43698)
scaffold0038 (85-272)||(117283-117470)
[»] chr4 (2 HSPs)
chr4 (21-228)||(5090394-5090601)
chr4 (133-184)||(18731053-18731104)
[»] chr2 (1 HSPs)
chr2 (62-211)||(3280210-3280359)
[»] chr5 (1 HSPs)
chr5 (166-206)||(16691423-16691463)


Alignment Details
Target: chr6 (Bit Score: 212; Significance: 1e-116; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 21 - 272
Target Start/End: Complemental strand, 28186134 - 28185883
Alignment:
Q  21 atccctagcatctgaacttcgccattagatccaaaatccataagtgaatttactttaagaaccctagactcaataccaacagggtaatcagcaacatata 120  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |||||||||||||||    
T  28186134 atccctagcatctgaacttcaccattagatccaaaatccataagtgaatttacttttagaaccctagactcgataccaacagggaaatcagcaacatata 28186035  T
Q  121 aaggaacatgattgatcttgttagatacatatttgactatcttctcaataaactcgtgttcataaccattcctacacaatcaaataagtttgagtaaatg 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| |||||||||||| ||| ||    
T  28186034 aaggaacatgattgatcttgttagatacatatttgactatcttctcaataaactcgtgttcatagccattcctacccaataaaataagtttgattaagtg 28185935  T
Q  221 catcacaaattcacaaccacatcaatttattaataatagttgtataaataca 272  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  28185934 catcacaaattcacagccacatcaatttattaataatagttgtataaataca 28185883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 21 - 272
Target Start/End: Complemental strand, 28227693 - 28227443
Alignment:
Q  21 atccctagcatctgaacttcgccattagatccaaaatccataagtgaatttactttaagaaccctagactcaataccaacagggtaatcagcaacatata 120  Q
    ||||||| ||||||  |||| ||||||||||||| ||||||||||||||||||||| || |||||||| |||| ||||||||||||||| ||||||| ||    
T  28227693 atccctatcatctgtgcttcaccattagatccaacatccataagtgaatttacttttaggaccctagattcaacaccaacagggtaatcggcaacatgta 28227594  T
Q  121 aaggaacatgattgatcttgttagatacatatttgactatcttctcaataaactcgtgttcataaccattcctacacaatcaaataagtttgagtaaatg 220  Q
    ||||||||||||||||||||||||||| |||||||||||||||||| |||||||||  |||||| |||||||||| ||||||||||| ||||||||||||    
T  28227593 aaggaacatgattgatcttgttagatatatatttgactatcttctcgataaactcgcattcatagccattcctacccaatcaaataa-tttgagtaaatg 28227495  T
Q  221 catcacaaattcacaaccacatcaatttattaataatagttgtataaataca 272  Q
    |||||||||||||||| || ||||||||||||||||||||||||||||||||    
T  28227494 catcacaaattcacaatcatatcaatttattaataatagttgtataaataca 28227443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 21 - 272
Target Start/End: Complemental strand, 28326219 - 28325968
Alignment:
Q  21 atccctagcatctgaacttcgccattagatccaaaatccataagtgaatttactttaagaaccctagactcaataccaacagggtaatcagcaacatata 120  Q
    |||||||||||||||||||  ||||||||||||| ||| ||||||||||||||||  || | ||||||||| | ||| ||||||||||| ||||||||||    
T  28326219 atccctagcatctgaactttaccattagatccaacatctataagtgaatttacttctaggatcctagactcgagacctacagggtaatccgcaacatata 28326120  T
Q  121 aaggaacatgattgatcttgttagatacatatttgactatcttctcaataaactcgtgttcataaccattcctacacaatcaaataagtttgagtaaatg 220  Q
    ||||||||  | |||||||  |  |||| |||||||||||||||||||||||||||| |||||| |||||||||| ||||||||||||||||||||||||    
T  28326119 aaggaacacaactgatcttcctgaatacgtatttgactatcttctcaataaactcgtattcatagccattcctacccaatcaaataagtttgagtaaatg 28326020  T
Q  221 catcacaaattcacaaccacatcaatttattaataatagttgtataaataca 272  Q
    |||| |||||||||||  |||||||| | || ||||  ||||||| ||||||    
T  28326019 catcgcaaattcacaataacatcaatgtgttgataactgttgtatgaataca 28325968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 21 - 230
Target Start/End: Original strand, 28297181 - 28297390
Alignment:
Q  21 atccctagcatctgaacttcgccattagatccaaaatccataagtgaatttactttaagaaccctagactcaataccaacagggtaatcagcaacatata 120  Q
    |||||||||||||||||||| ||||||||||  | ||||| || |||||||||||| || ||||||||||  | |||||| |||||||| ||||||||||    
T  28297181 atccctagcatctgaacttcaccattagatctgagatccagaaatgaatttacttttaggaccctagactggagaccaacggggtaatcggcaacatata 28297280  T
Q  121 aaggaacatgattgatcttgttagatacatatttgactatcttctcaataaactcgtgttcataaccattcctacacaatcaaataagtttgagtaaatg 220  Q
    |||||||| ||||||||||| | ||||| |||||||||||||||||||||||||| | |||||| |||||||||  ||||||||||||||||||||||||    
T  28297281 aaggaacacgattgatcttgctggatacgtatttgactatcttctcaataaactcatattcatatccattcctatccaatcaaataagtttgagtaaatg 28297380  T
Q  221 catcacaaat 230  Q
    ||||||||||    
T  28297381 catcacaaat 28297390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 21 - 230
Target Start/End: Complemental strand, 28514892 - 28514683
Alignment:
Q  21 atccctagcatctgaacttcgccattagatccaaaatccataagtgaatttactttaagaaccctagactcaataccaacagggtaatcagcaacatata 120  Q
    |||||||||||||||||||| ||||||||||  | ||||| || |||||||||||| || ||||||||||  | |||||| |||||||| ||||||||||    
T  28514892 atccctagcatctgaacttcaccattagatctgagatccagaaatgaatttacttttaggaccctagactggagaccaacggggtaatcggcaacatata 28514793  T
Q  121 aaggaacatgattgatcttgttagatacatatttgactatcttctcaataaactcgtgttcataaccattcctacacaatcaaataagtttgagtaaatg 220  Q
    |||||||| ||||||||||| | ||||| |||||||||||||||||||||||||| | |||||| |||||||||  ||||||||||||||||||||||||    
T  28514792 aaggaacacgattgatcttgctggatacgtatttgactatcttctcaataaactcatattcatatccattcctatccaatcaaataagtttgagtaaatg 28514693  T
Q  221 catcacaaat 230  Q
    ||||||||||    
T  28514692 catcacaaat 28514683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 21 - 267
Target Start/End: Complemental strand, 28181858 - 28181612
Alignment:
Q  21 atccctagcatctgaacttcgccattagatccaaaatccataagtgaatttactttaagaaccctagactcaataccaacagggtaatcagcaacatata 120  Q
    |||||||||||||||||||| ||||||||||| | ||||| || |||||||||||| || ||||||||||| | |||||||  |||||| ||||||||||    
T  28181858 atccctagcatctgaacttcaccattagatccgacatccagaaatgaatttacttttaggaccctagactcgagaccaacatagtaatcggcaacatata 28181759  T
Q  121 aaggaacatgattgatcttgttagatacatatttgactatcttctcaataaactcgtgttcataaccattcctacacaatcaaataagtttgag-taaat 219  Q
    ||||||||  ||||||||| || || || |||||||||||||| || |||||||| | |||||| |||||||||| ||||||||||||||||||  ||||    
T  28181758 aaggaacacaattgatctttttggaaacgtatttgactatcttttcgataaactcatattcatatccattcctacccaatcaaataagtttgagcaaaat 28181659  T
Q  220 gcatcacaaattcacaaccacatcaatttattaataatagttgtataa 267  Q
     ||||| |||| | ||||||||||||||| ||||||||||||||||||    
T  28181658 acatcataaatgctcaaccacatcaattt-ttaataatagttgtataa 28181612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 21 - 233
Target Start/End: Complemental strand, 28235306 - 28235096
Alignment:
Q  21 atccctagcatctgaacttcgccattagatccaaaatccataagtgaatttactttaagaaccctagactcaataccaacagggtaatcagcaacatata 120  Q
    |||||||||||||||||||| ||||||||||||| ||||| |  |||| ||||||| || ||||||||||  | ||||||||||||||| ||||||||||    
T  28235306 atccctagcatctgaacttcaccattagatccaacatccacacatgaagttacttttaggaccctagacttgagaccaacagggtaatcggcaacatata 28235207  T
Q  121 aaggaacatgattgatcttgttagatacatatttgactatcttctcaataaactcgtgttcataaccattcctacacaatcaaataagtttgagtaaatg 220  Q
    |||||||||||||||||||||| |||||||||||||||||||||| |||| ||| || |||||| |||||||||||||  ||||||||| |  || ||||    
T  28235206 aaggaacatgattgatcttgtttgatacatatttgactatcttcttaatatacttgtattcatatccattcctacaca--caaataagtcttggttaatg 28235109  T
Q  221 catcacaaattca 233  Q
    |||||||||||||    
T  28235108 catcacaaattca 28235096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 21 - 225
Target Start/End: Complemental strand, 28243536 - 28243332
Alignment:
Q  21 atccctagcatctgaacttcgccattagatccaaaatccataagtgaatttactttaagaaccctagactcaataccaacagggtaatcagcaacatata 120  Q
    ||||||||||| |||||| | ||| ||||||| | ||| | || |  ||||||||| || ||||||||||| | ||||||||||||||||||||||||||    
T  28243536 atccctagcatatgaactacaccagtagatccgacatcaagaaatttatttacttttaggaccctagactcgagaccaacagggtaatcagcaacatata 28243437  T
Q  121 aaggaacatgattgatcttgttagatacatatttgactatcttctcaataaactcgtgttcataaccattcctacacaatcaaataagtttgagtaaatg 220  Q
     ||||||| ||||||| ||| | |||| |||||| |||||||||||||||||||||| |||||| |||||||||| ||||||||||||||||||||||||    
T  28243436 gaggaacacgattgattttgctggataaatattttactatcttctcaataaactcgtattcatatccattcctacccaatcaaataagtttgagtaaatg 28243337  T
Q  221 catca 225  Q
    |||||    
T  28243336 catca 28243332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 96 - 219
Target Start/End: Original strand, 28097959 - 28098082
Alignment:
Q  96 ccaacagggtaatcagcaacatataaaggaacatgattgatcttgttagatacatatttgactatcttctcaataaactcgtgttcataaccattcctac 195  Q
    ||||| ||||||||| |||||| |||| | |||||||| |  ||||| ||||||||||||||||| | |  ||||||||||  |||||| ||||||||      
T  28097959 ccaacggggtaatcaacaacatgtaaaaggacatgattcaatttgttggatacatatttgactatttcccgaataaactcgaattcatatccattcctgg 28098058  T
Q  196 acaatcaaataagtttgagtaaat 219  Q
     |||| | ||||||||||||||||    
T  28098059 ccaataagataagtttgagtaaat 28098082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 21 - 75
Target Start/End: Complemental strand, 28503855 - 28503801
Alignment:
Q  21 atccctagcatctgaacttcgccattagatccaaaatccataagtgaatttactt 75  Q
    |||||||||||||||||||  ||||||||||||| ||| ||||||||||||||||    
T  28503855 atccctagcatctgaactttaccattagatccaacatctataagtgaatttactt 28503801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 96 - 184
Target Start/End: Complemental strand, 26849378 - 26849290
Alignment:
Q  96 ccaacagggtaatcagcaacatataaaggaacatgattgatcttgttagatacatatttgactatcttctcaataaactcgtgttcata 184  Q
    |||||| |||||||||||||||  ||||||||||| ||||||||||| || ||||  || ||||| ||| ||||||| | |||||||||    
T  26849378 ccaacaaggtaatcagcaacatgcaaaggaacatggttgatcttgttggagacatccttaactattttcccaataaaatggtgttcata 26849290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 95 - 172
Target Start/End: Complemental strand, 31288972 - 31288895
Alignment:
Q  95 accaacagggtaatcagcaacatataaaggaacatgattgatcttgttagatacatatttgactatcttctcaataaa 172  Q
    ||||||| ||||||||||||||| |||||||||||| || |||||||| || |||| | | ||||| || ||||||||    
T  31288972 accaacaaggtaatcagcaacatgtaaaggaacatggttaatcttgttggagacatctgtaactattttttcaataaa 31288895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 96 - 172
Target Start/End: Complemental strand, 26623937 - 26623861
Alignment:
Q  96 ccaacagggtaatcagcaacatataaaggaacatgattgatcttgttagatacatatttgactatcttctcaataaa 172  Q
    ||||||||||| | |||||||| ||| || ||| ||||||||||||| || |  |||||||||||||| ||||||||    
T  26623937 ccaacagggtatttagcaacatgtaagggcacacgattgatcttgttggagatgtatttgactatcttttcaataaa 26623861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 96 - 172
Target Start/End: Complemental strand, 26729914 - 26729838
Alignment:
Q  96 ccaacagggtaatcagcaacatataaaggaacatgattgatcttgttagatacatatttgactatcttctcaataaa 172  Q
    ||||||||||| | |||||||| ||| || ||| ||||||||||||| || |  |||||||||||||| ||||||||    
T  26729914 ccaacagggtatttagcaacatgtaagggcacacgattgatcttgttggagatgtatttgactatcttttcaataaa 26729838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 95 - 142
Target Start/End: Complemental strand, 26959793 - 26959746
Alignment:
Q  95 accaacagggtaatcagcaacatataaaggaacatgattgatcttgtt 142  Q
    ||||||| ||||||||||||||| |||||||||||| || ||||||||    
T  26959793 accaacaaggtaatcagcaacatgtaaaggaacatggttaatcttgtt 26959746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 184
Target Start/End: Complemental strand, 25483694 - 25483637
Alignment:
Q  127 catgattgatcttgttagatacatatttgactatcttctcaataaactcgtgttcata 184  Q
    |||||||||| ||||| || |  |||| |||||||||||||||||||| |||||||||    
T  25483694 catgattgatattgttggagatgtattggactatcttctcaataaacttgtgttcata 25483637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 141
Target Start/End: Complemental strand, 26975617 - 26975572
Alignment:
Q  96 ccaacagggtaatcagcaacatataaaggaacatgattgatcttgt 141  Q
    |||||| ||||||||||||||| ||||||||| || ||||||||||    
T  26975617 ccaacaaggtaatcagcaacatgtaaaggaacgtggttgatcttgt 26975572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 96 - 184
Target Start/End: Complemental strand, 25539209 - 25539121
Alignment:
Q  96 ccaacagggtaatcagcaacatataaaggaacatgattgatcttgttagatacatatttgactatcttctcaataaactcgtgttcata 184  Q
    ||||||||||| |  || |||||||||  |||||||||||| ||||| || |  | || |||||||||||||||||||| || ||||||    
T  25539209 ccaacagggtatttggccacatataaaaaaacatgattgatattgttggagatgtcttcgactatcttctcaataaacttgtattcata 25539121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 21 - 272
Target Start/End: Original strand, 57735 - 57987
Alignment:
Q  21 atccctagcatctgaacttcgccattagatccaaaatccataagtgaatttactttaagaaccctagactcaataccaacagggtaatcagcaacatata 120  Q
    |||||||||||||||||||| |||||||||| || ||||| ||||||||||||||| || |||||||| || ||||||||||||||||| ||||||||||    
T  57735 atccctagcatctgaacttcaccattagatctaacatccagaagtgaatttacttttaggaccctagattcgataccaacagggtaatcggcaacatata 57834  T
Q  121 aaggaacatgattgatcttgttagatacatatttgactatcttctcaataaactcgtgttcataaccattcctacac-aatcaaataagtttgagtaaat 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||| |||||||||| | ||| ||||||||||||||||||    
T  57835 aaggaacatgattgatcttgttagatacatatttgactatcttctcaataaactcgcattcatatccattcctacccaaatgaaataagtttgagtaaat 57934  T
Q  220 gcatcacaaattcacaaccacatcaatttattaataatagttgtataaataca 272  Q
    |||||| |||||||||||| | |||||||||||||||||||||||||||||||    
T  57935 gcatcataaattcacaaccgcgtcaatttattaataatagttgtataaataca 57987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 168; Significance: 5e-90; HSPs: 4)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 21 - 272
Target Start/End: Complemental strand, 28191 - 27941
Alignment:
Q  21 atccctagcatctgaacttcgccattagatccaaaatccataagtgaatttactttaagaaccctagactcaataccaacagggtaatcagcaacatata 120  Q
    ||||||| ||||||  |||| ||||||||||||| ||||||||||||||||||||| || |||||||| |||| ||||||||||||||| ||||||| ||    
T  28191 atccctatcatctgtgcttcaccattagatccaacatccataagtgaatttacttttaggaccctagattcaacaccaacagggtaatcggcaacatgta 28092  T
Q  121 aaggaacatgattgatcttgttagatacatatttgactatcttctcaataaactcgtgttcataaccattcctacacaatcaaataagtttgagtaaatg 220  Q
    ||||||||||||||||||||||||||| |||||||||||||||||| |||||||||  |||||| |||||||||| ||||||||||| ||||||||||||    
T  28091 aaggaacatgattgatcttgttagatatatatttgactatcttctcgataaactcgcattcatagccattcctacccaatcaaataa-tttgagtaaatg 27993  T
Q  221 catcacaaattcacaaccacatcaatttattaataatagttgtataaataca 272  Q
    |||||||||||||||| || ||||||||||||||||||||||||||||||||    
T  27992 catcacaaattcacaatcatatcaatttattaataatagttgtataaataca 27941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #2
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 21 - 233
Target Start/End: Complemental strand, 35468 - 35258
Alignment:
Q  21 atccctagcatctgaacttcgccattagatccaaaatccataagtgaatttactttaagaaccctagactcaataccaacagggtaatcagcaacatata 120  Q
    |||||||||||||||||||| ||||||||||||| ||||| |  |||| ||||||| || ||||||||||  | ||||||||||||||| ||||||||||    
T  35468 atccctagcatctgaacttcaccattagatccaacatccacacatgaagttacttttaggaccctagacttgagaccaacagggtaatcggcaacatata 35369  T
Q  121 aaggaacatgattgatcttgttagatacatatttgactatcttctcaataaactcgtgttcataaccattcctacacaatcaaataagtttgagtaaatg 220  Q
    |||||||||||||||||||||| |||||||||||||||||||||| |||| ||| || |||||| |||||||||||||  ||||||||| |  || ||||    
T  35368 aaggaacatgattgatcttgtttgatacatatttgactatcttcttaatatacttgtattcatatccattcctacaca--caaataagtcttggttaatg 35271  T
Q  221 catcacaaattca 233  Q
    |||||||||||||    
T  35270 catcacaaattca 35258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 21 - 225
Target Start/End: Complemental strand, 43698 - 43494
Alignment:
Q  21 atccctagcatctgaacttcgccattagatccaaaatccataagtgaatttactttaagaaccctagactcaataccaacagggtaatcagcaacatata 120  Q
    ||||||||||| |||||| | ||| ||||||| | ||| | || |  ||||||||| || ||||||||||| | ||||||||||||||||||||||||||    
T  43698 atccctagcatatgaactacaccagtagatccgacatcaagaaatttatttacttttaggaccctagactcgagaccaacagggtaatcagcaacatata 43599  T
Q  121 aaggaacatgattgatcttgttagatacatatttgactatcttctcaataaactcgtgttcataaccattcctacacaatcaaataagtttgagtaaatg 220  Q
     ||||||| ||||||| ||| | |||| |||||| |||||||||||||||||||||| |||||| |||||||||| ||||||||||||||||||||||||    
T  43598 gaggaacacgattgattttgctggataaatattttactatcttctcaataaactcgtattcatatccattcctacccaatcaaataagtttgagtaaatg 43499  T
Q  221 catca 225  Q
    |||||    
T  43498 catca 43494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #4
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 85 - 272
Target Start/End: Complemental strand, 117470 - 117283
Alignment:
Q  85 tagactcaataccaacagggtaatcagcaacatataaaggaacatgattgatcttgttagatacatatttgactatcttctcaataaactcgtgttcata 184  Q
    ||||||| | ||| ||||||||||| ||||||||||||||||||  | |||||||  |  |||| |||||||||||||||||||||||||||| ||||||    
T  117470 tagactcgagacctacagggtaatccgcaacatataaaggaacacaactgatcttcctgaatacgtatttgactatcttctcaataaactcgtattcata 117371  T
Q  185 accattcctacacaatcaaataagtttgagtaaatgcatcacaaattcacaaccacatcaatttattaataatagttgtataaataca 272  Q
     |||||||||| |||||||||||||||||||||||||||| |||||||||||  |||||||| | || ||||  ||||||| ||||||    
T  117370 gccattcctacccaatcaaataagtttgagtaaatgcatcgcaaattcacaataacatcaatgtgttgataactgttgtatgaataca 117283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 21 - 228
Target Start/End: Original strand, 5090394 - 5090601
Alignment:
Q  21 atccctagcatctgaacttcgccattagatccaaaatccataagtgaatttactttaagaaccctagactcaataccaacagggtaatcagcaacatata 120  Q
    ||||||||||| || ||||   ||||||| |||| |||||  ||||||| || ||| ||||| | || ||| |  ||||| |||||||||||||||| ||    
T  5090394 atccctagcatttggactttatcattagaaccaatatccagtagtgaatataatttcagaacacgaggctctaatccaaccgggtaatcagcaacatgta 5090493  T
Q  121 aaggaacatgattgatcttgttagatacatatttgactatcttctcaataaactcgtgttcataaccattcctacacaatcaaataagtttgagtaaatg 220  Q
    |||||   |||||||||||||| || |||||| |||||||| ||| ||||||||||| |||||| ||| |||||   ||||| |||| ||||| ||||||    
T  5090494 aaggagtgtgattgatcttgttggagacatatgtgactatcatctgaataaactcgtattcatatccagtcctatcaaatcagataaatttgaataaatg 5090593  T
Q  221 catcacaa 228  Q
    ||||||||    
T  5090594 catcacaa 5090601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 133 - 184
Target Start/End: Original strand, 18731053 - 18731104
Alignment:
Q  133 tgatcttgttagatacatatttgactatcttctcaataaactcgtgttcata 184  Q
    |||||||||| || ||||||||||||||||| |||||||||| || ||||||    
T  18731053 tgatcttgttggagacatatttgactatcttttcaataaacttgtattcata 18731104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 62 - 211
Target Start/End: Complemental strand, 3280359 - 3280210
Alignment:
Q  62 aagtgaatttactttaagaaccctagactcaataccaacagggtaatcagcaacatataaaggaacatgattgatcttgttagatacatatttgactatc 161  Q
    |||||||||||||||||| || | |||||  || ||||| ||||||||  |||||| ||||||| || |||| |||||||| ||||||| |||||||||     
T  3280359 aagtgaatttactttaaggactcgagactgcatgccaaccgggtaatcgacaacatgtaaaggagcacgatttatcttgttggatacatttttgactata 3280260  T
Q  162 ttctcaataaactcgtgttcataaccattcctacacaatcaaataagttt 211  Q
    | | | ||||||| || || |||  ||||||| | |||||| ||||||||    
T  3280259 tcccctataaacttgtattgatattcattcctgcccaatcatataagttt 3280210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 166 - 206
Target Start/End: Complemental strand, 16691463 - 16691423
Alignment:
Q  166 caataaactcgtgttcataaccattcctacacaatcaaata 206  Q
    |||||||||||||||||||  ||||||||||||||||||||    
T  16691463 caataaactcgtgttcatattcattcctacacaatcaaata 16691423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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