View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18532_low_34 (Length: 300)

Name: NF18532_low_34
Description: NF18532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18532_low_34
NF18532_low_34
[»] chr3 (3 HSPs)
chr3 (58-211)||(18657031-18657184)
chr3 (221-281)||(18655739-18655799)
chr3 (12-60)||(18657218-18657266)
[»] chr4 (3 HSPs)
chr4 (60-211)||(5733249-5733400)
chr4 (221-281)||(5731969-5732029)
chr4 (12-60)||(5733437-5733485)
[»] chr1 (1 HSPs)
chr1 (121-206)||(51299634-51299720)
[»] chr8 (1 HSPs)
chr8 (149-211)||(37473538-37473600)


Alignment Details
Target: chr3 (Bit Score: 133; Significance: 4e-69; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 58 - 211
Target Start/End: Complemental strand, 18657184 - 18657031
Alignment:
Q  58 ttgggagaatgagagctaaatagggataataggaattgtaacacccccaatgagnnnnnnntccaacatttagcacaataaataaaaacacattcaacat 157  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||    
T  18657184 ttgggagaatgagagctaaatagggataataggaattgtaacacccccaatgagaaaaaaatccaacatttagcacaataaataaaaacacattcaacat 18657085  T
Q  158 caatttatccgttcaacatcatgaattcattgcttcaatagattcaacaaaaaa 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18657084 caatttatccgttcaacatcatgaattcattgcttcaatagattcaacaaaaaa 18657031  T

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Target: chr3; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 221 - 281
Target Start/End: Complemental strand, 18655799 - 18655739
Alignment:
Q  221 atctctggttgtttgggagggggagtgagacgaagagggaaggtttgagttgaggaagaag 281  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18655799 atctctggttgtttgggagggggagtgagacgaagagggaaggtttgagttgaggaagaag 18655739  T

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Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 12 - 60
Target Start/End: Complemental strand, 18657266 - 18657218
Alignment:
Q  12 gaagaatatgttggactgataggtgtgtaggtactggtggaagaagttg 60  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  18657266 gaagaaaatgttggactgataggtgtgtaggtactggtggaagaagttg 18657218  T

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Target: chr4 (Bit Score: 131; Significance: 6e-68; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 60 - 211
Target Start/End: Complemental strand, 5733400 - 5733249
Alignment:
Q  60 gggagaatgagagctaaatagggataataggaattgtaacacccccaatgagnnnnnnntccaacatttagcacaataaataaaaacacattcaacatca 159  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||    
T  5733400 gggagaatgagagctaaatagggataataggaattgtaacacccccaatgagaaaaaaatccaacatttagcacaataaataaaaacacattcaacatca 5733301  T
Q  160 atttatccgttcaacatcatgaattcattgcttcaatagattcaacaaaaaa 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5733300 atttatccgttcaacatcatgaattcattgcttcaatagattcaacaaaaaa 5733249  T

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Target: chr4; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 221 - 281
Target Start/End: Complemental strand, 5732029 - 5731969
Alignment:
Q  221 atctctggttgtttgggagggggagtgagacgaagagggaaggtttgagttgaggaagaag 281  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5732029 atctctggttgtttgggagggggagtgagacgaagagggaaggtttgagttgaggaagaag 5731969  T

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Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 12 - 60
Target Start/End: Complemental strand, 5733485 - 5733437
Alignment:
Q  12 gaagaatatgttggactgataggtgtgtaggtactggtggaagaagttg 60  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  5733485 gaagaaaatgttggactgataggtgtgtaggtactggtggaagaagttg 5733437  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 121 - 206
Target Start/End: Original strand, 51299634 - 51299720
Alignment:
Q  121 caacatttagcacaataaataaaaac-acattcaacatcaatttatccgttcaacatcatgaattcattgcttcaatagattcaaca 206  Q
    ||||||||| |||||||||||||| | | |||||||||||||| |||| |||||||||||||||||||  ||| || ||||||||||    
T  51299634 caacatttaacacaataaataaaacccagattcaacatcaattcatcccttcaacatcatgaattcatgactttaacagattcaaca 51299720  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 149 - 211
Target Start/End: Complemental strand, 37473600 - 37473538
Alignment:
Q  149 attcaacatcaatttatccgttcaacatcatgaattcattgcttcaatagattcaacaaaaaa 211  Q
    |||||||||||||| |||| ||||||||||||||||||| ||||| |  ||||||||| ||||    
T  37473600 attcaacatcaattcatcccttcaacatcatgaattcatggcttccacggattcaacacaaaa 37473538  T

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