View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18532_low_35 (Length: 299)
Name: NF18532_low_35
Description: NF18532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18532_low_35 |
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Alignment Details
Target: chr4 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 48 - 286
Target Start/End: Complemental strand, 21307515 - 21307276
Alignment:
| Q |
48 |
tttgttaagaaccacactataaatattaagcatattaaattaatgaaa-catcataaaacaaatctatcttgtacacatatacatcttaaaaacaacttg |
146 |
Q |
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| T |
21307515 |
tttgttaacaagaacactataaatattaagcatattaaattcatcaaatcatcataaaacaaatctatcttgaacacatatacatcttaaaaacaactag |
21307416 |
T |
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| Q |
147 |
taatcaaaatggttgttgtaggtggaattttgaagctcaagaataatgtcttcaaaaagctccaaaaaaccctattaatgagaagaaaggataataaatc |
246 |
Q |
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| T |
21307415 |
aaatcaaaatggttgttgtaggtggaattttgaagctcaagaataatgtcttcaaaaagctccaaaaaaccctattattgggaagaaaggataataaatc |
21307316 |
T |
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| Q |
247 |
aaggtatgtggcaaaggatgtgaaaaaaggacatattgtt |
286 |
Q |
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| T |
21307315 |
aaggtatgaggcaaaggatgtgaaaaaaggacattttgtt |
21307276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 19 - 286
Target Start/End: Complemental strand, 21298121 - 21297857
Alignment:
| Q |
19 |
atatagtgcccaaattattggtgtcttaatttgttaagaaccacactataaatattaagcatattaaattaatgaaa-catcataaaacaaatctatctt |
117 |
Q |
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| T |
21298121 |
atatagtgcccaaataattagtgtctt----tgttaagaagcacactataaatataaagcatattaaattgatcaaatcatcataaaacaaatctatctt |
21298026 |
T |
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| Q |
118 |
gtacacatatacatcttaaaaacaacttgtaatcaaaatggttgttgtaggtggaattttgaagctcaagaataatgtcttcaaaaagctccaaaaaacc |
217 |
Q |
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| T |
21298025 |
gaacacatatacatcttaaaaacaactagaaatcaaaatggttgttgtaggtggaattttgaagctcaagaataatgtcttcattaagctccacaaaacc |
21297926 |
T |
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| Q |
218 |
ctattaatgagaagaaaggataataaatcaaggtatgtggcaaaggatgtgaaaaaaggacatattgtt |
286 |
Q |
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| T |
21297925 |
ctattaatgggaagaaatgattataaatcaaggtatgtggcaaaggatgtgaaaaaaggacattttgtt |
21297857 |
T |
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