View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18532_low_37 (Length: 292)
Name: NF18532_low_37
Description: NF18532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18532_low_37 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 274
Target Start/End: Complemental strand, 45684823 - 45684550
Alignment:
| Q |
1 |
cactaactactatagctgggaattaactgtctaactaacttcagctttctgtcaaagaaaacaatagattcaactctgagctgtactgtaacaccttatt |
100 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45684823 |
cactaactaatatagctgggaattaactgtctaactaacttcagctttctgtcaaagaaaacaatagattcaactctgagctgtactgtaacaccttatt |
45684724 |
T |
|
| Q |
101 |
tcctctgtttcttcggatctcaactctcttggatatattatacacactagaggatgccaaactagtatcatttttctaaattcattcttgaaagcatcca |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
45684723 |
tcctctgtttcttcggatctcaactctcttggatatattatacacactagaggatgccaaactagtatcatttttttaaattcattcttgaaagcatcca |
45684624 |
T |
|
| Q |
201 |
attctaacccattttagaagacaccagtcactgcaggaaaaatcttgcagcagaaagttccattgtctacttgg |
274 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45684623 |
attctaacccattttagaagacaccagtcactgcaggaaaaatcttgcagcagaaagttccattgtctacttgg |
45684550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University