View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18532_low_39 (Length: 284)
Name: NF18532_low_39
Description: NF18532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18532_low_39 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 32 - 265
Target Start/End: Original strand, 6972464 - 6972697
Alignment:
| Q |
32 |
tataaccttaataagtcaaccacagtatattagttaatatgcaaaacaaaaaacacaattgtatggataaagtaatttgatattcaaatttacaaaataa |
131 |
Q |
| |
|
|||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6972464 |
tatagccttaatgagtcaaccacagtatattagttaatatgcaaaacaaaaaacacaattgtatggataaagtaatttgatattcaaatttacaaaataa |
6972563 |
T |
|
| Q |
132 |
tgtaaggatgtggttcattgagtgataattggacaagttgttggactattgaatttatatacaaccagtactcactaaaccattgtctatttggtggtaa |
231 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6972564 |
tttaaggatgtggttcattgagtgataattggacaagttgttggactattgaatttatatacaaccagtactcactaaaccattgtctatttggtggtaa |
6972663 |
T |
|
| Q |
232 |
tacaaaggtacaatggtccctataaagtcgaaga |
265 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
6972664 |
tacaaaggtacaatggtccctataaagtcgaaga |
6972697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University