View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18532_low_41 (Length: 267)
Name: NF18532_low_41
Description: NF18532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18532_low_41 |
 | |
|
| [»] chr7 (13 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 259; Significance: 1e-144; HSPs: 13)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 267
Target Start/End: Original strand, 4697820 - 4698086
Alignment:
| Q |
1 |
tttttatcattggagttggagggtatggtaacgtgttcaaaggttacatcgatgaaggtacacctgtagcaataaaacgtttgaaaccgggttctcaaca |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4697820 |
tttttatcattggagttggagggtttggtaacgtgttcaaaggttacatcgatgaaggtacacctgtagcaataaaacgtttgaaaccgggttctcaaca |
4697919 |
T |
|
| Q |
101 |
gggtgtaaacgagttcatgaatgaaatcgagttgctctctcaacttcgtcacattcacttggtttctctcattggatattgcaacgaaggtgcagagatg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4697920 |
aggtgtaaacgagttcatgaatgaaatcgagttgctctctcaacttcgtcacattcacttggtttctctcattggatattgcaacgaaggtgcagagatg |
4698019 |
T |
|
| Q |
201 |
attctcgtttacgacttcatggaacgtggcactcttcgtgaatatctctatggttcggataacgaac |
267 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4698020 |
attctcgtttacgacttcatggaacgtggcactcttcgtgaatatctctatggttcggataacgaac |
4698086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 267
Target Start/End: Complemental strand, 4863375 - 4863109
Alignment:
| Q |
1 |
tttttatcattggagttggagggtatggtaacgtgttcaaaggttacatcgatgaaggtacacctgtagcaataaaacgtttgaaaccgggttctcaaca |
100 |
Q |
| |
|
|||| ||||||||||||||||||| || ||||||| ||||||||| || |||| || | |||||| || ||||||||| | ||||| ||||||||||| |
|
|
| T |
4863375 |
ttttcatcattggagttggagggttcggcaacgtgtacaaaggttatattgatggagacatacctgttgcgataaaacgtcttaaaccaggttctcaaca |
4863276 |
T |
|
| Q |
101 |
gggtgtaaacgagttcatgaatgaaatcgagttgctctctcaacttcgtcacattcacttggtttctctcattggatattgcaacgaaggtgcagagatg |
200 |
Q |
| |
|
||| |||| |||||||||||||| ||||| || |||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
4863275 |
aggtataaatgagttcatgaatgagatcgaattactctctcagcttcgtcatattcacttggtttctctcattggatattgcaacgaaggtgaggagatg |
4863176 |
T |
|
| Q |
201 |
attctcgtttacgacttcatggaacgtggcactcttcgtgaatatctctatggttcggataacgaac |
267 |
Q |
| |
|
||||||||||| ||||||||| ||||||||||||| ||||||||||| |||||||||||||| |||| |
|
|
| T |
4863175 |
attctcgtttatgacttcatgcaacgtggcactctccgtgaatatctttatggttcggataatgaac |
4863109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 1 - 267
Target Start/End: Original strand, 4846651 - 4846917
Alignment:
| Q |
1 |
tttttatcattggagttggagggtatggtaacgtgttcaaaggttacatcgatgaaggtacacctgtagcaataaaacgtttgaaaccgggttctcaaca |
100 |
Q |
| |
|
||||||||||||||| |||||||| || ||||||| ||||||||||||| ||| | |||||||| || ||||||||| ||||||||||||| | | |
|
|
| T |
4846651 |
tttttatcattggagctggagggttcggcaacgtgtacaaaggttacatcaatggactcacacctgttgcgataaaacgtcgtaaaccgggttctcgata |
4846750 |
T |
|
| Q |
101 |
gggtgtaaacgagttcatgaatgaaatcgagttgctctctcaacttcgtcacattcacttggtttctctcattggatattgcaacgaaggtgcagagatg |
200 |
Q |
| |
|
||| |||| || |||||||||||||||||| |||||||||| |||||||| |||||||||||||| |||||||||||||||||||||| |||||||||| |
|
|
| T |
4846751 |
aggtctaaatgaattcatgaatgaaatcgagatgctctctcagcttcgtcatattcacttggtttccctcattggatattgcaacgaagatgcagagatg |
4846850 |
T |
|
| Q |
201 |
attctcgtttacgacttcatggaacgtggcactcttcgtgaatatctctatggttcggataacgaac |
267 |
Q |
| |
|
||||| ||||| ||||||||| ||||||| ||||| ||||| ||||||||||||||||||| |||| |
|
|
| T |
4846851 |
attctagtttatgacttcatgcaacgtggtactctcagtgaacatctctatggttcggataatgaac |
4846917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 1 - 267
Target Start/End: Original strand, 4712696 - 4712962
Alignment:
| Q |
1 |
tttttatcattggagttggagggtatggtaacgtgttcaaaggttacatcgatgaaggtacacctgtagcaataaaacgtttgaaaccgggttctcaaca |
100 |
Q |
| |
|
|||||||||| || |||||||| | || ||||||| |||||||||||| |||| | | |||||| || ||||||||| ||| |||||||| ||| |
|
|
| T |
4712696 |
tttttatcatcggggttggaggattcggcaacgtgtacaaaggttacattgatggactcatacctgttgcgataaaacgtcgtaaattgggttctcgaca |
4712795 |
T |
|
| Q |
101 |
gggtgtaaacgagttcatgaatgaaatcgagttgctctctcaacttcgtcacattcacttggtttctctcattggatattgcaacgaaggtgcagagatg |
200 |
Q |
| |
|
||| |||| || ||||||||||||||||||||||||||||| |||||||| |||||||| ||||| ||||||||||||||||| |||| |||||||||| |
|
|
| T |
4712796 |
aggtctaaatgaattcatgaatgaaatcgagttgctctctcagcttcgtcatattcacttagtttccctcattggatattgcaatgaagatgcagagatg |
4712895 |
T |
|
| Q |
201 |
attctcgtttacgacttcatggaacgtggcactcttcgtgaatatctctatggttcggataacgaac |
267 |
Q |
| |
|
||||| ||||| ||||| ||||||| ||||||||| |||||| |||||||||||||||||||||||| |
|
|
| T |
4712896 |
attcttgtttatgactttatggaacatggcactctccgtgaacatctctatggttcggataacgaac |
4712962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 4784465 - 4784727
Alignment:
| Q |
1 |
tttttatcattggagttggagggtatggtaacgtgttcaaaggttacatcgatgaaggtacacctgtagcaataaaacgtttgaaaccgggttctcaaca |
100 |
Q |
| |
|
|||||||||| || |||||||||| || || |||| ||||||||| || |||| || |||||| || || ||||||||| | ||||| ||||||||||| |
|
|
| T |
4784465 |
tttttatcatcggggttggagggttcggcaatgtgtacaaaggttatattgatggagttacaccagttgcgataaaacgtcttaaaccaggttctcaaca |
4784564 |
T |
|
| Q |
101 |
gggtgtaaacgagttcatgaatgaaatcgagttgctctctcaacttcgtcacattcacttggtttctctcattggatattgcaacgaaggtgcagagatg |
200 |
Q |
| |
|
||||| ||||||||| ||||||| || |||||||||||||| |||||||| |||||||||||||| || |||||||||||||| ||||||| ||||||| |
|
|
| T |
4784565 |
aggtgtgaacgagttcttgaatgagattgagttgctctctcagcttcgtcatattcacttggtttcacttattggatattgcaatgaaggtgtagagatg |
4784664 |
T |
|
| Q |
201 |
attctcgtttacgacttcatggaacgtggcactcttcgtgaatatctctatggttcggataac |
263 |
Q |
| |
|
||||||||||| ||||||||| ||||||||| ||| |||||||||| ||||| || |||||| |
|
|
| T |
4784665 |
attctcgtttatgacttcatgcaacgtggcagtctatgtgaatatctttatggatcagataac |
4784727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 4816894 - 4817156
Alignment:
| Q |
1 |
tttttatcattggagttggagggtatggtaacgtgttcaaaggttacatcgatgaaggtacacctgtagcaataaaacgtttgaaaccgggttctcaaca |
100 |
Q |
| |
|
|||||||||| || |||||||||| || || |||| ||||||||| || |||| || |||||| || || ||||||||| | ||||| ||||||||||| |
|
|
| T |
4816894 |
tttttatcatcggggttggagggttcggcaatgtgtacaaaggttatattgatggagttacaccagttgcgataaaacgtcttaaacctggttctcaaca |
4816993 |
T |
|
| Q |
101 |
gggtgtaaacgagttcatgaatgaaatcgagttgctctctcaacttcgtcacattcacttggtttctctcattggatattgcaacgaaggtgcagagatg |
200 |
Q |
| |
|
||||| ||||||||| ||||||| || |||||||||||||| |||||||| |||||||||||||| || |||||||||||||| ||||||| ||||||| |
|
|
| T |
4816994 |
aggtgttaacgagttcttgaatgagattgagttgctctctcagcttcgtcatattcacttggtttcacttattggatattgcaatgaaggtgtagagatg |
4817093 |
T |
|
| Q |
201 |
attctcgtttacgacttcatggaacgtggcactcttcgtgaatatctctatggttcggataac |
263 |
Q |
| |
|
||||||||||| ||||||||| ||||||||| ||| |||||||||| ||||| || |||||| |
|
|
| T |
4817094 |
attctcgtttatgacttcatgcaacgtggcagtctatgtgaatatctttatggatcagataac |
4817156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 88 - 265
Target Start/End: Complemental strand, 4643103 - 4642926
Alignment:
| Q |
88 |
cgggttctcaacagggtgtaaacgagttcatgaatgaaatcgagttgctctctcaacttcgtcacattcacttggtttctctcattggatattgcaacga |
187 |
Q |
| |
|
|||| |||||||| |||| |||||||||||||||||||||||||||||||| || ||||| |||||||||||||| || ||| | |||||||||||||| |
|
|
| T |
4643103 |
cgggctctcaacaaggtgccaacgagttcatgaatgaaatcgagttgctctcccagcttcgccacattcacttggtgtccctcgtgggatattgcaacga |
4643004 |
T |
|
| Q |
188 |
aggtgcagagatgattctcgtttacgacttcatggaacgtggcactcttcgtgaatatctctatggttcggataacga |
265 |
Q |
| |
|
| ||||||||||| | ||||| || |||||| | | || |||||| |||| ||||| |||||||| ||||||| |
|
|
| T |
4643003 |
tgacacagagatgattttggtttatgagttcatgcagcacggtactctttgtgagtatctttatggttctaataacga |
4642926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 5 - 187
Target Start/End: Complemental strand, 4672122 - 4671940
Alignment:
| Q |
5 |
tatcattggagttggagggtatggtaacgtgttcaaaggttacatcgatgaaggtacacctgtagcaataaaacgtttgaaaccgggttctcaacagggt |
104 |
Q |
| |
|
|||||| ||||||||||||| ||| ||| ||| |||||||| |||||| | |||| ||| || |||||||| | ||| |||| ||||| || ||| |
|
|
| T |
4672122 |
tatcatcggagttggagggtttggaaacctgtacaaaggttgtgtcgatggatccacacttgttgccataaaacggctcaaatcgggctctcagcaaggt |
4672023 |
T |
|
| Q |
105 |
gtaaacgagttcatgaatgaaatcgagttgctctctcaacttcgtcacattcacttggtttctctcattggatattgcaacga |
187 |
Q |
| |
|
| |||||||||||||| ||||||||||| |||||||||||||| |||||||||||||| || ||| ||||||||||| |||| |
|
|
| T |
4672022 |
gccaacgagttcatgaacgaaatcgagttactctctcaacttcgccacattcacttggtatccctcgttggatattgcgacga |
4671940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 6 - 181
Target Start/End: Complemental strand, 4661285 - 4661110
Alignment:
| Q |
6 |
atcattggagttggagggtatggtaacgtgttcaaaggttacatcgatgaaggtacacctgtagcaataaaacgtttgaaaccgggttctcaacagggtg |
105 |
Q |
| |
|
||||||||||||||||||| ||| ||||||| |||||||| | |||| | |||| ||| || || ||||| | ||| |||| |||||||| |||| |
|
|
| T |
4661285 |
atcattggagttggagggtttggcaacgtgtacaaaggttgtgttgatggatcaacacttgttgcgattaaacgcctcaaatcgggctctcaacaaggtg |
4661186 |
T |
|
| Q |
106 |
taaacgagttcatgaatgaaatcgagttgctctctcaacttcgtcacattcacttggtttctctcattggatattg |
181 |
Q |
| |
|
| |||||||||||||| ||||||||||||||||| || ||||| |||||||| ||||| || ||||| |||||||| |
|
|
| T |
4661185 |
tcaacgagttcatgaacgaaatcgagttgctctcccagcttcgccacattcatttggtgtccctcatgggatattg |
4661110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 6 - 221
Target Start/End: Complemental strand, 4666416 - 4666201
Alignment:
| Q |
6 |
atcattggagttggagggtatggtaacgtgttcaaaggttacatcgatgaaggtacacctgtagcaataaaacgtttgaaaccgggttctcaacagggtg |
105 |
Q |
| |
|
||||| ||||||||||||| ||| ||||||| |||||||| |||||| | |||| ||| || |||||||| | ||| | || |||||||| |||| |
|
|
| T |
4666416 |
atcatcggagttggagggtttggcaacgtgtacaaaggttgtgtcgatggatccacacttgttgccataaaacgcctcaaatcaggctctcaacaaggtg |
4666317 |
T |
|
| Q |
106 |
taaacgagttcatgaatgaaatcgagttgctctctcaacttcgtcacattcacttggtttctctcattggatattgcaacgaaggtgcagagatgattct |
205 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||||| ||||| |||||||||||||| || || | ||||||||||| || | ||||||||||||| |
|
|
| T |
4666316 |
ccaacgagttcatgaacgaaatcgaattgctctctcagcttcgccacattcacttggtatcccttgtgggatattgcaatgacgacacagagatgattct |
4666217 |
T |
|
| Q |
206 |
cgtttacgacttcatg |
221 |
Q |
| |
|
||||| || |||||| |
|
|
| T |
4666216 |
ggtttatgagttcatg |
4666201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 6 - 221
Target Start/End: Complemental strand, 4630390 - 4630175
Alignment:
| Q |
6 |
atcattggagttggagggtatggtaacgtgttcaaaggttacatcgatgaaggtacacctgtagcaataaaacgtttgaaaccgggttctcaacagggtg |
105 |
Q |
| |
|
||||| ||| ||||||||| ||| ||||||| |||||||| |||||| | |||||||| || |||||||| | ||| | || |||||||| |||| |
|
|
| T |
4630390 |
atcatcggatttggagggtttgggaacgtgtacaaaggttgtgtcgatggatccacacctgttgcgataaaacgcctcaaatcaggctctcaacaaggtg |
4630291 |
T |
|
| Q |
106 |
taaacgagttcatgaatgaaatcgagttgctctctcaacttcgtcacattcacttggtttctctcattggatattgcaacgaaggtgcagagatgattct |
205 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| || ||||| |||||||||||||| || || | ||||||||||| || ||||||||||||| |
|
|
| T |
4630290 |
ccaacgagttcatgaacgaaatcgagttgctctcccagcttcgccacattcacttggtgtcccttgtaggatattgcaatgacaacacagagatgattct |
4630191 |
T |
|
| Q |
206 |
cgtttacgacttcatg |
221 |
Q |
| |
|
||||| || |||||| |
|
|
| T |
4630190 |
ggtttatgagttcatg |
4630175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 4653006 - 4652823
Alignment:
| Q |
1 |
tttttatcattggagttggagggtatggtaacgtgttcaaaggttacatcgatgaaggtacacctgtagcaataaaacgtttgaaaccgggttctcaaca |
100 |
Q |
| |
|
|||| ||||| || |||||||| | ||| ||||||| |||||||| |||||||| | | ||||| || |||||||| | ||| | || |||||||| |
|
|
| T |
4653006 |
ttttcatcatcggtgttggaggatttggcaacgtgtacaaaggttgcatcgatggatccatgcctgttgcgataaaacgcctcaaatctggctctcaaca |
4652907 |
T |
|
| Q |
101 |
gggtgtaaacgagttcatgaatgaaatcgagttgctctctcaacttcgtcacattcacttggtttctctcattggatattgcaa |
184 |
Q |
| |
|
|||| ||||||||||||||||| |||||||| ||||| || ||||| |||||||||||||| || ||| | ||||||||||| |
|
|
| T |
4652906 |
aggtgccaacgagttcatgaatgagatcgagttactctcccagcttcgccacattcacttggtatccctcgtgggatattgcaa |
4652823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 88 - 187
Target Start/End: Complemental strand, 4636256 - 4636157
Alignment:
| Q |
88 |
cgggttctcaacagggtgtaaacgagttcatgaatgaaatcgagttgctctctcaacttcgtcacattcacttggtttctctcattggatattgcaacga |
187 |
Q |
| |
|
|||| |||||||| |||| ||| ||||||||||| || |||||||||||||| || ||||| |||||||||||||| || || | |||||||||||||| |
|
|
| T |
4636256 |
cgggctctcaacaaggtgcaaatgagttcatgaacgagatcgagttgctctcccagcttcgccacattcacttggtatcccttgtgggatattgcaacga |
4636157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 67; Significance: 8e-30; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 6 - 256
Target Start/End: Original strand, 18926374 - 18926624
Alignment:
| Q |
6 |
atcattggagttggagggtatggtaacgtgttcaaaggttacatcgatgaaggtacacctgtagcaataaaacgtttgaaaccgggttctcaacagggtg |
105 |
Q |
| |
|
||||| ||||||||||||| ||| ||||||| ||||||| ||||||| || ||||| || |||||||||||| | ||||| || |||||||| || | |
|
|
| T |
18926374 |
atcatcggagttggagggtttggcaacgtgtataaaggtttcatcgataaatccacacccgttgcaataaaacgtctcaaaccaggctctcaacaagggg |
18926473 |
T |
|
| Q |
106 |
taaacgagttcatgaatgaaatcgagttgctctctcaacttcgtcacattcacttggtttctctcattggatattgcaacgaaggtgcagagatgattct |
205 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||| |||||||| |||| || ||| | || || ||||||| |||||||||||| |
|
|
| T |
18926474 |
ccaacgagttcatgaatgagatcgagttgctctctcaacttcgccacattcatctggtatccctcgtcgggtactgcaacggcaacaaagagatgattct |
18926573 |
T |
|
| Q |
206 |
cgtttacgacttcatggaacgtggcactcttcgtgaatatctctatggttc |
256 |
Q |
| |
|
|||| || |||||| ||||||| |||||| |||| ||||| |||||||| |
|
|
| T |
18926574 |
gatttatgagttcatgcaacgtggtactctttgtgagtatctatatggttc |
18926624 |
T |
|
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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 69 - 188
Target Start/End: Original strand, 5479308 - 5479427
Alignment:
| Q |
69 |
gcaataaaacgtttgaaaccgggttctcaacagggtgtaaacgagttcatgaatgaaatcgagttgctctctcaacttcgtcacattcacttggtttctc |
168 |
Q |
| |
|
||||||||||| | ||||||||||| ||||| |||| ||| |||||||| ||||||||||| ||||||| | |||||||| ||||| | |||||| |
|
|
| T |
5479308 |
gcaataaaacggcttaaaccgggttcacaacaaggtgaaaatgagttcatcaatgaaatcgacatgctctcgaagcttcgtcatattcatcttgtttctt |
5479407 |
T |
|
| Q |
169 |
tcattggatattgcaacgaa |
188 |
Q |
| |
|
| ||||| || ||||||||| |
|
|
| T |
5479408 |
tgattggttactgcaacgaa |
5479427 |
T |
|
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