View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18532_low_42 (Length: 265)
Name: NF18532_low_42
Description: NF18532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18532_low_42 |
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Alignment Details
Target: chr2 (Bit Score: 227; Significance: 1e-125; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 12861828 - 12862074
Alignment:
| Q |
1 |
aggagtaattggaatcgagagaatctttatgcacatcaagttgcttatgcgtccattgatgcttattttgcgtttcttatcggaatttgtttccaagctt |
100 |
Q |
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| T |
12861828 |
aggagtaattggaatcaagagaatctttatgcacatcaagttgcttatgcgtccattgatgcttattttgcgtttcttatcggaatttgtttccaagctt |
12861927 |
T |
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| Q |
101 |
ggaggtacccttaagatcgattttactttctaaatttcaatcaagattcaagattatagtgttaatgtctactgttaagatcgattaataactcttatgt |
200 |
Q |
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| T |
12861928 |
ggaggtacccttaagatcgattttactttctaaatttcaatcaagattcaagattatagtgttaatgtctactgttaagatcgattaatcactcttatgt |
12862027 |
T |
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| Q |
201 |
tcgtaactca-tttagagattatagtgttgttgagtattgcacttat |
246 |
Q |
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| T |
12862028 |
tcgtaactcattttagagattatagtgttattgagtattgcacttat |
12862074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 12843653 - 12843425
Alignment:
| Q |
1 |
aggagtaattggaatcgagagaatctttatgcacatcaagttgcttatgcgtccattgatgcttattttgcgtttcttatcggaatttgtttccaagctt |
100 |
Q |
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||||| ||||||||| |||||||||||||| | ||||| ||||||||||||||||||||||||||| ||| ||| |||||||||| | | ||||||| |
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| T |
12843653 |
aggagcaattggaatgcagagaatctttatgaagatcaaattgcttatgcgtccattgatgcttattgtgcttttagtatcggaattcgcgttcaagctt |
12843554 |
T |
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| Q |
101 |
ggaggtacccttaagatcgattttactttctaaatttcaatcaagattcaagattatagtgttaatgtctactgttaagatcgattaataactcttatgt |
200 |
Q |
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| T |
12843553 |
ggaggtaccgttaagattgattttacattgtaaatttcaatcaagattcaagattatagtgttaatgtctactgttaagatcgattaatcattcttatgt |
12843454 |
T |
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| Q |
201 |
tcgtaactca-tttagagattatagtgtt |
228 |
Q |
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| T |
12843453 |
tcttaactcattttagagattatagtgtt |
12843425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 155 - 246
Target Start/End: Complemental strand, 13125837 - 13125745
Alignment:
| Q |
155 |
tatagtgttaatgtctactgttaagatcgattaataactcttatgttcgtaactca-tttagagattatagtgttgttgagtattgcacttat |
246 |
Q |
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| T |
13125837 |
tatagtgttaatgtgtactgttaagatcgattaatcactcttatgttcctaactcattttagagattatagtgttgttgaatattgcacttat |
13125745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 173
Target Start/End: Complemental strand, 13125629 - 13125589
Alignment:
| Q |
133 |
aatttcaatcaagattcaagattatagtgttaatgtctact |
173 |
Q |
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| T |
13125629 |
aatttctatcaagattcaagatcatagtgttaatgtctact |
13125589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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