View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18532_low_44 (Length: 261)
Name: NF18532_low_44
Description: NF18532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18532_low_44 |
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Alignment Details
Target: chr6 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 21 - 247
Target Start/End: Complemental strand, 30357389 - 30357163
Alignment:
| Q |
21 |
aggctcccatgttcgtccataaaacaaataatgagtcatatttaaccaattcaaactccaccttgacaacaaaggttctttgctcctgtttgaagaaaaa |
120 |
Q |
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| T |
30357389 |
aggctcccatgttcgatcataaaacaaacaatgagtcatatttaaccaattcaaactccaccttgacaacaaaggttctttgctcctgtttgaagaaaaa |
30357290 |
T |
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| Q |
121 |
ataatatcattccttgctttagaaataagccatatcataataaaccaaacaaatcaaaatccctttattcgtttcttagttcccgcaagcccattcaaac |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
30357289 |
ataatatcattccttgctttagaaataagccatatcataataaaccaaacaaatcaaaatccctttattcgtttcttagttcccgcaaccccattcaaac |
30357190 |
T |
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| Q |
221 |
attgtaaacatgttatgaggaattatc |
247 |
Q |
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||||||||||||||||||||||||||| |
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| T |
30357189 |
attgtaaacatgttatgaggaattatc |
30357163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 142 - 247
Target Start/End: Complemental strand, 30354835 - 30354730
Alignment:
| Q |
142 |
gaaataagccatatcataataaaccaaacaaatcaaaatccctttattcgtttcttagttcccgcaagcccattcaaacattgtaaacatgttatgagga |
241 |
Q |
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|||||||| |||| | ||| ||||| ||||| |||||||||| || |||||||||||| | || |||||||||||||||| ||||||||||||||| |
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| T |
30354835 |
gaaataagacataccccaatgaaccagacaaacgaaaatcccttcctttgtttcttagttctcataaccccattcaaacattgtgaacatgttatgagga |
30354736 |
T |
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| Q |
242 |
attatc |
247 |
Q |
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||||| |
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| T |
30354735 |
tttatc |
30354730 |
T |
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