View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18532_low_45 (Length: 260)
Name: NF18532_low_45
Description: NF18532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18532_low_45 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 17 - 247
Target Start/End: Original strand, 13299316 - 13299546
Alignment:
| Q |
17 |
atatcaaacctggtgtttgcatattcatacagctttcccgtgctggaaaatataacaagtccaacttgtgcatcacataggattgctaattctttggctt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13299316 |
atatcaaacctggtgtttgcatattcatacagctttcccgtgctggaaaatataacaagtccaacttgtgcatcacataggattgctaattctttggctt |
13299415 |
T |
|
| Q |
117 |
tcttgatcaatccctttctcctctttgagaaagtcacttgcctgcttgtacagttgtcgatccttcgaatcacaatcttccctcttcccattcttaattt |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13299416 |
tcttgatcaatccctttctcctctttgagaaagtcacttgcctgcttgtacagttgtcgatccttcgaatcacaatcttccctcttcccattcttaattt |
13299515 |
T |
|
| Q |
217 |
tcaccttagttaatttatgtccctagctagg |
247 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
13299516 |
tcaccttagttaatttatgtccctagctagg |
13299546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 76 - 207
Target Start/End: Original strand, 36925662 - 36925793
Alignment:
| Q |
76 |
tccaacttgtgcatcacataggattgctaattctttggctttcttgatcaatccctttctcctctttgagaaagtcacttgcctgcttgtacagttgtcg |
175 |
Q |
| |
|
|||||||||||||||||| || || | || |||||| |||||||| ||||| || ||||| |||||||||||||||||||| | |||||| | || || |
|
|
| T |
36925662 |
tccaacttgtgcatcacaaagaatggatagttctttagctttcttcatcaacccttttcttctctttgagaaagtcacttgacggcttgtcaaattctca |
36925761 |
T |
|
| Q |
176 |
atccttcgaatcacaatcttccctcttcccat |
207 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| |
|
|
| T |
36925762 |
atccttcgaatcacaatctttcctcttcccat |
36925793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 24 - 207
Target Start/End: Complemental strand, 2115403 - 2115220
Alignment:
| Q |
24 |
acctggtgtttgcatattcatacagctttcccgtgctggaaaatataacaagtccaacttgtgcatcacataggattgctaattctttggctttcttgat |
123 |
Q |
| |
|
|||| ||| ||| ||| ||||| |||||||| ||||||||||| | || | |||||||| |||||||| || || | ||||||||| |||||||| | |
|
|
| T |
2115403 |
acctagtgcttgaataatcataaagctttccagtgctggaaaagacaatcaatccaacttcagcatcacaaagaatggataattcttttgctttcttcaa |
2115304 |
T |
|
| Q |
124 |
caatccctttctcctctttgagaaagtcacttgcctgcttgtacagttgtcgatccttcgaatcacaatcttccctcttcccat |
207 |
Q |
| |
|
|||||| ||||| || |||||||||||||||||||||||||| | ||||| ||||||| ||| ||||||| ||||||||||| |
|
|
| T |
2115303 |
caatccatttcttctttttgagaaagtcacttgcctgcttgttgaattgtcaatccttctaattgcaatctttcctcttcccat |
2115220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University