View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18532_low_46 (Length: 248)
Name: NF18532_low_46
Description: NF18532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18532_low_46 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 1155748 - 1155971
Alignment:
| Q |
1 |
aatgtggagaggaaagaaatgtaactgattttacatatatgtgtttctaaactcaaaattaagatcttaaaacggtagtgccaaaaatgatataacaata |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1155748 |
aatgtggagaggaaagaaatgtaactgattttacatatatgtgtttctaaactcaaaattaagatcttaaaacggtagtgccaaaaatgatataacaata |
1155847 |
T |
|
| Q |
101 |
acaaaatagtagtctagaaatgtttttcattacaagcttcctctaaggctattaacatctcttaaacaaacaacataaagttaatggttcccattcctca |
200 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
1155848 |
acaaaatagtaatctagaaatgtttttcattacaagcttcctctaaggct-ctaacatatcttatacaaacaacataaagttaatggttcccattcctca |
1155946 |
T |
|
| Q |
201 |
tgcctaattacttaggttagcaagt |
225 |
Q |
| |
|
||| ||||||||||||||||||||| |
|
|
| T |
1155947 |
tgcttaattacttaggttagcaagt |
1155971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University