View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18532_low_48 (Length: 247)
Name: NF18532_low_48
Description: NF18532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18532_low_48 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 117; Significance: 1e-59; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 41 - 212
Target Start/End: Complemental strand, 16938767 - 16938595
Alignment:
| Q |
41 |
tataggtat-aaaagatatggatgatgaatataagtattggaaatgattggatcaattggaactacgacagatcacttcgatgttttaatatgattaaaa |
139 |
Q |
| |
|
||||||||| |||||||| |||||||||||| ||||||||||||||||| |||| |||||||||| |||| |||||||| | ||||||| ||||| |||| |
|
|
| T |
16938767 |
tataggtatgaaaagatagggatgatgaatacaagtattggaaatgatttgatctattggaactatgacatatcacttcaacgttttaaaatgatcaaaa |
16938668 |
T |
|
| Q |
140 |
aagcaaaacctgattaaaaacgcacacaaaccatcccacttgcaactgcagattttatgcataagaacatgta |
212 |
Q |
| |
|
||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16938667 |
aagcaaaacctgattaaaagcacacacaaaccatcccacttgcaactgcagattttatgcataagaacatgta |
16938595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 41 - 212
Target Start/End: Complemental strand, 17009432 - 17009260
Alignment:
| Q |
41 |
tataggtat-aaaagatatggatgatgaatataagtattggaaatgattggatcaattggaactacgacagatcacttcgatgttttaatatgattaaaa |
139 |
Q |
| |
|
||||||||| |||||||| |||||||||||| ||||||||||||||||| |||| |||||||||| |||| |||||||| | ||||||| ||||| |||| |
|
|
| T |
17009432 |
tataggtatgaaaagatagggatgatgaatacaagtattggaaatgatttgatctattggaactatgacatatcacttcaacgttttaaaatgatcaaaa |
17009333 |
T |
|
| Q |
140 |
aagcaaaacctgattaaaaacgcacacaaaccatcccacttgcaactgcagattttatgcataagaacatgta |
212 |
Q |
| |
|
||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17009332 |
aagcaaaacctgattaaaagcacacacaaaccatcccacttgcaactgcagattttatgcataagaacatgta |
17009260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 109; Significance: 6e-55; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 60 - 212
Target Start/End: Original strand, 31394091 - 31394242
Alignment:
| Q |
60 |
gatgatgaatataagtattggaaatgattggatcaattggaactacgacagatcacttcgatgttttaatatgattaaaaaagcaaaacctgattaaaaa |
159 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| | |||||| ||||| |||| |||||||| |||||||||| |
|
|
| T |
31394091 |
gatgatgaatataagtattggaaatgattggattcattggaactacgaaagatcacttcaacattttaaaatgatcaaaa-agcaaaacttgattaaaaa |
31394189 |
T |
|
| Q |
160 |
cgcacacaaaccatcccacttgcaactgcagattttatgcataagaacatgta |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31394190 |
cgcacacaaaccatcccacttgcaactgcagattttatgcataagaacatgta |
31394242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University