View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18532_low_49 (Length: 243)
Name: NF18532_low_49
Description: NF18532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18532_low_49 |
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Alignment Details
Target: chr5 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 49 - 227
Target Start/End: Complemental strand, 10703982 - 10703804
Alignment:
| Q |
49 |
tacaatatattgggagaatattcaagtatcagnnnnnnnngttttgttgaaggatgacattgacacagtgacagtatcagttatatttcatannnnnnnc |
148 |
Q |
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| T |
10703982 |
tacaatatattgggagaatattcaagtatcagttttttttgttttgttgaaggatgacattgacacagtgacagtatcagttatatttcatatttttttc |
10703883 |
T |
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| Q |
149 |
gctggtatatgaactcaattttacatcggtcttcaatgcacttaaacctaaatatatttgatttaatttgtggacaatc |
227 |
Q |
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| T |
10703882 |
gctggtatatgaactcaattttacatcggtcttcaatgcacttaaacctaaatatgtttgatttaatttgtggacaatc |
10703804 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 227
Target Start/End: Complemental strand, 10699379 - 10699303
Alignment:
| Q |
151 |
tggtatatgaactcaattttacatcggtcttcaatgcacttaaacctaaatatatttgatttaatttgtggacaatc |
227 |
Q |
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| T |
10699379 |
tggtatatgaactcaagtttacatagtttttcaatgcacttaaacgcaaagatttctgaattaagttgtggacaatc |
10699303 |
T |
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