View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18532_low_52 (Length: 236)
Name: NF18532_low_52
Description: NF18532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18532_low_52 |
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Alignment Details
Target: chr4 (Bit Score: 161; Significance: 5e-86; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 14 - 222
Target Start/End: Complemental strand, 31247281 - 31247073
Alignment:
| Q |
14 |
aatatataatccagctacatatctaccaaaaaatgtttttcttactggcaagacagtatttgatgggagctcaggcaaatatttcagctgcttacaatgc |
113 |
Q |
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| T |
31247281 |
aatatataatccagctacatatctaccaaaaaatgtttttcctactggcaagacagtatttgatgagagctcaggcaaatatttcagctgtttacaatgc |
31247182 |
T |
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| Q |
114 |
tccaagttcaattgtctaagtttggaaagttccttgatgctagaaggtaatgtaacaaaattgtttacccccaaatttaggatttctaagcaatgtaacc |
213 |
Q |
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| T |
31247181 |
tccaagttcaactgtctaagtttggaaagttccttgatgctagaaggtagagtaacaaaattgtttcctcccacatttagaatttctaagcaatgtagcc |
31247082 |
T |
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| Q |
214 |
atccaattg |
222 |
Q |
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|||||||| |
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| T |
31247081 |
ttccaattg |
31247073 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 96 - 222
Target Start/End: Complemental strand, 31212788 - 31212662
Alignment:
| Q |
96 |
ttcagctgcttacaatgctccaagttcaattgtctaagtttggaaagttccttgatgctagaaggtaatgtaacaaaattgtttacccccaaatttagga |
195 |
Q |
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|||||||||||||| |||||||||||||||| ||||||||||||||||| || ||||||||||||| ||| ||||||||||| |||| || ||||| | |
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| T |
31212788 |
ttcagctgcttacagtgctccaagttcaattctctaagtttggaaagttatttcatgctagaaggtagtgtcacaaaattgttcccccctaactttagca |
31212689 |
T |
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| Q |
196 |
tttctaagcaatgtaaccatccaattg |
222 |
Q |
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| T |
31212688 |
tttctaagcaatgcaacaacccaattg |
31212662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 75 - 220
Target Start/End: Complemental strand, 13614990 - 13614845
Alignment:
| Q |
75 |
gatgggagctcaggcaaatatttcagctgcttacaatgctccaagttcaattgtctaagtttggaaagttccttgatgctagaaggtaatgtaacaaaat |
174 |
Q |
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|||||||| || || ||||||||||| |||||||| || | ||||||||||| |||||||||||||||||| | || |||| |||| |||||||| |
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| T |
13614990 |
gatgggagttccggtaaatatttcagttgcttacagtgattcaagttcaattttctaagtttggaaagttcttctatactaggcggtagagtaacaaatc |
13614891 |
T |
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| Q |
175 |
tgtttacccccaaatttaggatttctaagcaatgtaaccatccaat |
220 |
Q |
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| T |
13614890 |
tgttcccacccaaccttaggatttctaagcagtgtaaccacccaat |
13614845 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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