View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18532_low_8 (Length: 590)
Name: NF18532_low_8
Description: NF18532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18532_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 385; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 18 - 481
Target Start/End: Complemental strand, 27837972 - 27837508
Alignment:
| Q |
18 |
agtttcaaggatatata--aaaggcatgcgttgctattcaaagatagtttgtattttgtacaacttaattttccaatcagcattcaagaagagatggtgt |
115 |
Q |
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| T |
27837972 |
agtttcaaggatatatataaaaggcatgcgttgctattcaaagatagtttgtattttgtacaacttaattttccaatcagcattcaagaagtgatggtgt |
27837873 |
T |
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| Q |
116 |
ggccaattcgtaagttatacttaattttcagtttgannnnnnnaacctttaatttttgtaaggtcataaaaataataattgaatttaatcactagctaat |
215 |
Q |
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|||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27837872 |
ggccaattcgtaagttatacttaattttcagtttgattttttta-cctttaatttttgtaaggtcataaaaataataattgaatttaatcactagctaat |
27837774 |
T |
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| Q |
216 |
caaattctgctttttagggtccagaattattagttcagttctccgatcaaaggcacctttagtggcttcatacgtccatggagactctctggtttcctcc |
315 |
Q |
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| T |
27837773 |
caaattctgctttttagggtccagaattattagttcagttctccgatcaaaggcacctttagtggcttcatacgtccatggagactctctggtttcctcc |
27837674 |
T |
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| Q |
316 |
ataacaaggccatgcccaaaatttgtgagtttcttcattgtttatgtatatagtttttcctttaatctgttgttagttgctgtttattaagcattgcttt |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27837673 |
ataacaaggccatgcccaaaatttgtgagtttcttcattgtttatgtatatagtttttcctttaatctgttgttagttgctgtttattaagcattgcttt |
27837574 |
T |
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| Q |
416 |
cttcacnnnnnnngaagaagctattgtatactttttatcatttatgctatattgatataacttaac |
481 |
Q |
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| T |
27837573 |
cttcacaaaaaaagaagaagctactgtatacttttgatcctttacgctatattgatataacttaac |
27837508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 530 - 576
Target Start/End: Complemental strand, 27837460 - 27837414
Alignment:
| Q |
530 |
gtataatttagctttgtttgtttcacaatccttggttttgatagtat |
576 |
Q |
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| T |
27837460 |
gtataatttagctttgtatgtctcacaatccttggttttgatagtat |
27837414 |
T |
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