View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18533_high_3 (Length: 424)
Name: NF18533_high_3
Description: NF18533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18533_high_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 18 - 414
Target Start/End: Complemental strand, 6285871 - 6285473
Alignment:
| Q |
18 |
gtatattgcagtcacagtcattttttgtcaatctctaatgatgtacaatacgttaaaacaaccaacatcatcacacacttaaagacaaacatatacaaca |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6285871 |
gtatattgcagtcacagtcattttttgtcaatctctaatgatgtacaatacgttaaaacaaccaacatcatcacacacttaaagacaaacatatacaaca |
6285772 |
T |
|
| Q |
118 |
taggtaataactttcaccaataagatcaatacatatatgatataaatgcatgttaccaacatgcattgtaaactcaaa--ctaaaagaaaccaaaacatg |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
6285771 |
taggtaataactttcaccaataagatcaatacatatatgatataaatgcatgttaccaacatgcattgtaaactcaaaaactaaaagaaaccaaaacatg |
6285672 |
T |
|
| Q |
216 |
ggatctatttctgaagatattcatgttcttccaaaatgttcaccttttgaagtagaagaagatgatgatgcatgtctctctgctatgcttctttgttgtg |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6285671 |
ggatctatttctgaagatattcatgttcttccaaaatgttcaccttttgaagtagtagaagatgatgatgcatgtctctctgctatgcttctttgttgtg |
6285572 |
T |
|
| Q |
316 |
gtccaatgatttatacttctgtgttaaaatctgccattgaattaaacctatttgatattatatcaaaggtaaatccaccaggtgtttcagcatcctatg |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
6285571 |
gtccaatgatttatacttctgtgttaaaatctgcaattgaattaaacctatttgatattatatcaaaggcaaatccaccaggtgtttcagcatcctatg |
6285473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University