View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18533_high_8 (Length: 240)
Name: NF18533_high_8
Description: NF18533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18533_high_8 |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 177; Significance: 2e-95; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 2 - 240
Target Start/End: Original strand, 33080313 - 33080569
Alignment:
| Q |
2 |
tcaacccataatccaacaagattttcactatatttctttgtattgaactcattttcttttcgttgaaggtgttt--------tctcttccaatttctaat |
93 |
Q |
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| T |
33080313 |
tcaacccataatccaacaagattttcactatatttctttgtattaaactcattttcttttcgttgaaggtgtttgactgttttctcttccaatttctaat |
33080412 |
T |
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| Q |
94 |
aggagtctcatctgcatg----------gttgatttcatcgctgactttgacacagaaaccatttaaccatgactaccactcttgtttatttattatatt |
183 |
Q |
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| T |
33080413 |
aggagtctcatctgaatgttcatctttggttgaattcatcgctgactttgacacagaaaccatttaaccatgactaccactcttgtttatttattatatt |
33080512 |
T |
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| Q |
184 |
ttctcagcagagtgttttttagaatctgaaccacaccttcctgacttccttttcaac |
240 |
Q |
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| T |
33080513 |
ttctcagcagagtgttttttagaatctgaaccataccttcctgacttccttttcaac |
33080569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 41513584 - 41513832
Alignment:
| Q |
1 |
ctcaacccataatccaacaagattttcactatatttctttgtattgaactcattttcttttcgttgaaggtgttttctcttccaatttctaataggagtc |
100 |
Q |
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| T |
41513584 |
ctcaacccaaaatccaacaagattttcactatatttctttgtattaaactcattttcttttcgtggaaggtgttttctcttccaatttctaataggagtc |
41513683 |
T |
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| Q |
101 |
tcatctgcatg----------gttgatttcatcgctgactttgacacagaaaccatttaaccatgactaccactcttgtttatttattatattttctcag |
190 |
Q |
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| T |
41513684 |
tcatctgaatgttcatctttggttgatttcatcgctgactttgacacagagaccatttaaccatgactaccactcttgtttatttcttatgttttcttag |
41513783 |
T |
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| Q |
191 |
cagagtgttttttagaatctgaaccacaccttcctgacttccttttcaac |
240 |
Q |
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| T |
41513784 |
cagagtg-cttttagaatctgaatcacaccttcctgacttccttttcaac |
41513832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 41522550 - 41522796
Alignment:
| Q |
1 |
ctcaacccataatccaacaagattttcactatatttctttgtattgaactcattttcttttcgttgaaggtgttttctcttccaatttctaataggagtc |
100 |
Q |
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| T |
41522550 |
ctcaatccataatccaacaagattttcactataattctttgtattaaactcattttcttttcgtggaaggtgttttctcttccaatttctgataggagtc |
41522649 |
T |
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| Q |
101 |
tcatctgca----------tggttgatttcatcgctgactttgacacagaaaccatttaaccatgactaccactcttgtttatttattatattttctcag |
190 |
Q |
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| T |
41522650 |
tcgtctgaatgttcatctttggttgatttcatcactgactttgacacagagaccatttaaccatgactaccactc--gtttctttcgtatgttttcttag |
41522747 |
T |
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| Q |
191 |
cagagtgttttttagaatctgaaccacaccttcctgacttccttttcaac |
240 |
Q |
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| T |
41522748 |
cagagtg-cttttagaatctgaatcacaccttcctgacttccttttcaac |
41522796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 4 - 99
Target Start/End: Original strand, 41498321 - 41498416
Alignment:
| Q |
4 |
aacccataatccaacaagattttcactatatttctttgtattgaactcattttcttttcgttgaaggtgttttctcttccaatttctaataggagt |
99 |
Q |
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||||||||||| ||||||| |||||||||||||||| ||||| |||||||||||||| | ||||||||||||| ||| ||||| | |||||||| |
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| T |
41498321 |
aacccataatctaacaagagtttcactatatttcttggtattagactcattttcttttaatggaaggtgttttctattcaaatttatcataggagt |
41498416 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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