View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18533_low_4 (Length: 378)
Name: NF18533_low_4
Description: NF18533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18533_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 7 - 372
Target Start/End: Original strand, 39703283 - 39703645
Alignment:
| Q |
7 |
cttaagaatgcattcaacataattattagtatctggcaattgaattcgtgacttcaaatttctcttcatcagcgttaggtataacaattcttcggcatca |
106 |
Q |
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| T |
39703283 |
cttaagaatgcattcaacataattattagtatctggcaattgaattcgtgacttcaaatttctcttcatcagcattaggtataacaattcttctgcatca |
39703382 |
T |
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| Q |
107 |
aatcctagaatatatttggatctaaatcatcgtcaagggctaacagccatttacttgctcatgtattgcttcaattattttagcctcaaatttagtttct |
206 |
Q |
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| T |
39703383 |
aatcctagaatatatttggatctaaatcatcgtcaagggccaacaaccatttacttgctcatgtattgcttcaattattttagcctcaaatttagtttct |
39703482 |
T |
|
| Q |
207 |
aaatgcacctggcaatgatagttaagaaatgaagtacataaaaacttcaaatagataacatggaagaagctttgaaaatatccctcaataagtaatgcaa |
306 |
Q |
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| T |
39703483 |
aaatgcacctggcaatgatagtt-agaaatgaagtacataaaaacttcaaatagataacatggaagaagctttgaaaatatccctcaataagtaatgcaa |
39703581 |
T |
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| Q |
307 |
aatgctaagaattaggacacattgacctatatatattgctatttaagaaacaacttgatatatatg |
372 |
Q |
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| T |
39703582 |
aatgctaagaattaggacacattgacc--tatacattcctatataagaaacaacttgatatatatg |
39703645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 129; Significance: 1e-66; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 49 - 249
Target Start/End: Complemental strand, 28059157 - 28058958
Alignment:
| Q |
49 |
aattcgtgacttcaaatttctcttcatcagcgttaggtataacaattcttcggcatcaaatcctagaatatatttggatctaaatcatcgtcaagggcta |
148 |
Q |
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| T |
28059157 |
aattcgtaacttcaaatttctcttcatcaacattaggtctagcgattcttcggcatcaaatcctacaatacattcggatctaaatcatcgtcaaggac-a |
28059059 |
T |
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| Q |
149 |
acagccatttacttgctcatgtattgcttcaattattttagcctcaaatttagtttctaaatgcacctggcaatgatagttaagaaatgaagtacataaa |
248 |
Q |
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||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| | | ||||||||||||||||||||||| |
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| T |
28059058 |
acaaccatttacttgctcatatattgcttcaattattttagcctcaaatttagtttctaaatgcacctagcattaagagttaagaaatgaagtacataaa |
28058959 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 192 - 372
Target Start/End: Complemental strand, 5894105 - 5893925
Alignment:
| Q |
192 |
tcaaatttagtttctaaatgcacctggcaatgatagttaagaaatgaagtacataaaaacttcaaatagataacatggaagaagctttgaaaatatccct |
291 |
Q |
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| T |
5894105 |
tcaaatttagtttcttaatgcacctagcattgagagttaagaaatgaagtacataaaaggttcaaatagataacatcgaagaagctttgaaaatatcccc |
5894006 |
T |
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| Q |
292 |
caataagtaatgc-aaaatgctaagaattaggacacattgacctatatatattgctat-ttaagaaacaacttgatatatatg |
372 |
Q |
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|||||||| |||| ||||||||||||||| ||||||||||| | ||| |||||||| | |||| ||||||||||||||||| |
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| T |
5894005 |
caataagtcatgcaaaaatgctaagaatttggacacattga--tctattcattgctatataaagagacaacttgatatatatg |
5893925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 273 - 336
Target Start/End: Complemental strand, 28058959 - 28058895
Alignment:
| Q |
273 |
aagctttgaaaatatccctcaataagtaatgcaaaa-tgctaagaattaggacacattgacctat |
336 |
Q |
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||||||||||||| | || |||||||| |||||||| |||||||||||||| |||| ||| |||| |
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| T |
28058959 |
aagctttgaaaatttaccccaataagtcatgcaaaaatgctaagaattagggcacaatgatctat |
28058895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 54; Significance: 6e-22; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 7 - 76
Target Start/End: Original strand, 927117 - 927186
Alignment:
| Q |
7 |
cttaagaatgcattcaacataattattagtatctggcaattgaattcgtgacttcaaatttctcttcatc |
76 |
Q |
| |
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|||||||||||||||||||| |||||||||||||||| ||| ||||| |||||||||||||||||||||| |
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| T |
927117 |
cttaagaatgcattcaacatgattattagtatctggcgattaaattcttgacttcaaatttctcttcatc |
927186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 106 - 209
Target Start/End: Original strand, 927193 - 927294
Alignment:
| Q |
106 |
aaatcctagaatatatttggatctaaatcatcgtcaagggctaacagccatttacttgctcatgtattgcttcaattattttagcctcaaatttagtttc |
205 |
Q |
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||||| ||||||| || |||| |||||||| ||||||| | |||| |||||||||||||||| |||||||||||||| |||| ||||||||||||| || |
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| T |
927193 |
aaatcttagaatacgttcggatataaatcatggtcaaggcc-aacaaccatttacttgctcatatattgcttcaatta-tttaacctcaaatttagtctc |
927290 |
T |
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| Q |
206 |
taaa |
209 |
Q |
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|||| |
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| T |
927291 |
taaa |
927294 |
T |
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