View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18533_low_6 (Length: 291)

Name: NF18533_low_6
Description: NF18533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18533_low_6
NF18533_low_6
[»] chr8 (1 HSPs)
chr8 (11-291)||(30189823-30190103)


Alignment Details
Target: chr8 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 11 - 291
Target Start/End: Complemental strand, 30190103 - 30189823
Alignment:
Q  11 cacagagcaccatatatgccatacgccaactagaagaaataaggttccaggcaaaatatgacctatgaaagatcccatttttctgatttacttttaccac 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30190103 cacagagcaccatatatgccatacgccaactagaagaaataaggttccaggcaaaatatgacctatgaaagatcccatttttctgatttacttttaccac 30190004  T
Q  111 tctcaaaataaataattcaagttcacttagtacttgtttggttccgcatccagcttgtaaatcttgtgtctccgtgtcgtttacactgcagttttatgaa 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30190003 tctcaaaataaataattcaagttcacttagtacttgtttggttccgcatccagcttgtaaatcttgtgtctccgtgtcgtttacactgcagttttatgaa 30189904  T
Q  211 ggtagaaattcaagctacagtctcactaaaatgcacttaatcaattggatccttgaatgattcttcagctgattatagcaa 291  Q
    |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||    
T  30189903 ggtagaaactcaagctacagtctcactaaaatgcacttaatcaactggatccttgaatgattcttcagctgatcatagcaa 30189823  T

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