View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18533_low_9 (Length: 258)

Name: NF18533_low_9
Description: NF18533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18533_low_9
NF18533_low_9
[»] chr3 (6 HSPs)
chr3 (6-106)||(43641266-43641366)
chr3 (5-106)||(50563646-50563747)
chr3 (1-106)||(52402959-52403064)
chr3 (1-66)||(20585400-20585465)
chr3 (160-192)||(43641404-43641436)
chr3 (160-192)||(50563562-50563594)
[»] chr8 (3 HSPs)
chr8 (1-106)||(45517797-45517902)
chr8 (48-103)||(10718285-10718340)
chr8 (1-66)||(22534598-22534663)
[»] chr7 (5 HSPs)
chr7 (1-106)||(9454806-9454911)
chr7 (45-106)||(32197744-32197805)
chr7 (14-106)||(39619629-39619721)
chr7 (14-106)||(41693777-41693869)
chr7 (160-192)||(9454725-9454757)
[»] chr1 (6 HSPs)
chr1 (1-106)||(24610037-24610142)
chr1 (45-106)||(35911724-35911785)
chr1 (68-106)||(34934583-34934621)
chr1 (1-106)||(24422633-24422738)
chr1 (48-103)||(27263073-27263128)
chr1 (68-106)||(35721283-35721321)
[»] chr6 (1 HSPs)
chr6 (1-106)||(17516280-17516385)
[»] chr5 (1 HSPs)
chr5 (1-95)||(35605418-35605512)


Alignment Details
Target: chr3 (Bit Score: 73; Significance: 2e-33; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 6 - 106
Target Start/End: Original strand, 43641266 - 43641366
Alignment:
Q  6 tttcttgctgatttggcacattctcgcatatgtggtatgtgctgactgtgtaaacttgtatgtgtggcatccaagtggcaattattttattttaactaat 105  Q
    ||||||| |||||||||||||| || |  |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  43641266 tttcttgttgatttggcacattttctctcatgtggtaggtgctgactgtgtaaacttgtatatgtggcatccaagtggcaattattttattttaactaat 43641365  T
Q  106 t 106  Q
    |    
T  43641366 t 43641366  T

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Target: chr3; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 5 - 106
Target Start/End: Complemental strand, 50563747 - 50563646
Alignment:
Q  5 ttttcttgctgatttggcacattctcgcatatgtggtatgtgctgactgtgtaaacttgtatgtgtggcatccaagtggcaattattttattttaactaa 104  Q
    ||||||||||||||||||||||| || |  |||||||| ||||||||||||||||||||||  |||||||| ||||||||||||||||||||||||||||    
T  50563747 ttttcttgctgatttggcacattttctctcatgtggtaggtgctgactgtgtaaacttgtacatgtggcatacaagtggcaattattttattttaactaa 50563648  T
Q  105 tt 106  Q
    ||    
T  50563647 tt 50563646  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 52403064 - 52402959
Alignment:
Q  1 cccattttcttgctgatttggcacattctcgcatatgtggtatgtgctgactgtgtaaacttgtatgtgtggcatccaagtggcaattattttattttaa 100  Q
    |||| ||||||| ||||||| ||||||   |||||||||| ||  ||||||| || |||||||||  |||| |||||| |||| ||||||||||||||||    
T  52403064 cccactttcttgatgatttgtcacatttgtgcatatgtggcattagctgactatgcaaacttgtacatgtgtcatccatgtggtaattattttattttaa 52402965  T
Q  101 ctaatt 106  Q
     |||||    
T  52402964 ataatt 52402959  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 20585465 - 20585400
Alignment:
Q  1 cccattttcttgctgatttggcacattctcgcatatgtggtatgtgctgactgtgtaaacttgtat 66  Q
    |||| ||||||||||||||| | |||| | || ||||||| |||||||||||||  ||||||||||    
T  20585465 cccactttcttgctgatttgactcatttttgcttatgtggcatgtgctgactgtacaaacttgtat 20585400  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 192
Target Start/End: Original strand, 43641404 - 43641436
Alignment:
Q  160 catttaattttaatttattaaaaacaacaaatc 192  Q
    |||||| ||||||||||||||||||||||||||    
T  43641404 catttatttttaatttattaaaaacaacaaatc 43641436  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 192
Target Start/End: Complemental strand, 50563594 - 50563562
Alignment:
Q  160 catttaattttaatttattaaaaacaacaaatc 192  Q
    |||||| ||||||||||||||||||||||||||    
T  50563594 catttatttttaatttattaaaaacaacaaatc 50563562  T

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Target: chr8 (Bit Score: 70; Significance: 1e-31; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 45517902 - 45517797
Alignment:
Q  1 cccattttcttgctgatttggcacattctcgcatatgtggtatgtgctgactgtgtaaacttgtatgtgtggcatccaagtggcaattattttattttaa 100  Q
    |||| ||||||||| ||||||| |||| |||| ||||||||| ||||||||||||||||||||||| ||||||||||| |||| ||||||||||||||||    
T  45517902 cccaatttcttgctaatttggcgcattttcgcttatgtggtaggtgctgactgtgtaaacttgtatatgtggcatccaggtggaaattattttattttaa 45517803  T
Q  101 ctaatt 106  Q
    ||||||    
T  45517802 ctaatt 45517797  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 48 - 103
Target Start/End: Complemental strand, 10718340 - 10718285
Alignment:
Q  48 tgactgtgtaaacttgtatgtgtggcatccaagtggcaattattttattttaacta 103  Q
    ||||||||||||| |||||  |||||||| ||||| ||||||||||||||| ||||    
T  10718340 tgactgtgtaaacatgtatacgtggcatctaagtgacaattattttatttttacta 10718285  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 22534663 - 22534598
Alignment:
Q  1 cccattttcttgctgatttggcacattctcgcatatgtggtatgtgctgactgtgtaaacttgtat 66  Q
    |||| ||||||||||||||||| |||| | || ||||||| | |||||||||||  ||||||||||    
T  22534663 cccactttcttgctgatttggctcatttttgcttatgtggcaagtgctgactgtacaaacttgtat 22534598  T

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Target: chr7 (Bit Score: 70; Significance: 1e-31; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 9454911 - 9454806
Alignment:
Q  1 cccattttcttgctgatttggcacattctcgcatatgtggtatgtgctgactgtgtaaacttgtatgtgtggcatccaagtggcaattattttattttaa 100  Q
    |||| |||||||||||||||||||||| |  |  ||||| || ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  9454911 cccactttcttgctgatttggcacattttttctcatgtgataggtgctgactgtgtaaacttgtatatgtggcatccaagtggcaattattttattttaa 9454812  T
Q  101 ctaatt 106  Q
    ||||||    
T  9454811 ctaatt 9454806  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 45 - 106
Target Start/End: Complemental strand, 32197805 - 32197744
Alignment:
Q  45 tgctgactgtgtaaacttgtatgtgtggcatccaagtggcaattattttattttaactaatt 106  Q
    ||||||| ||| |||| ||||  ||||||||||| ||| |||||||||||||||||||||||    
T  32197805 tgctgacggtgcaaacatgtacatgtggcatccaggtgacaattattttattttaactaatt 32197744  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 106
Target Start/End: Complemental strand, 39619721 - 39619629
Alignment:
Q  14 tgatttggcacattctcgcatatgtggtatgtgctgactgtgtaaacttgtatgtgtggcatccaagtggcaattattttattttaactaatt 106  Q
    ||||||| ||||||   |||||||||| ||  ||||||| || |||||||||  |||| |||||| |||| |||||||||||||||| |||||    
T  39619721 tgatttgtcacatttgtgcatatgtggcattagctgactatgcaaacttgtacatgtgtcatccatgtggtaattattttattttaaataatt 39619629  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 106
Target Start/End: Original strand, 41693777 - 41693869
Alignment:
Q  14 tgatttggcacattctcgcatatgtggtatgtgctgactgtgtaaacttgtatgtgtggcatccaagtggcaattattttattttaactaatt 106  Q
    ||||||| ||||||   |||||||||| ||  |||||| ||  |||||||||  |||| |||||| ||||||||||||||||||||| |||||    
T  41693777 tgatttgtcacatttgtgcatatgtggcattagctgacggtacaaacttgtacatgtgacatccacgtggcaattattttattttaaataatt 41693869  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 192
Target Start/End: Complemental strand, 9454757 - 9454725
Alignment:
Q  160 catttaattttaatttattaaaaacaacaaatc 192  Q
    |||||| ||||||||||||||||||||||||||    
T  9454757 catttatttttaatttattaaaaacaacaaatc 9454725  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 24610037 - 24610142
Alignment:
Q  1 cccattttcttgctgatttggcacattctcgcatatgtggtatgtgctgactgtgtaaacttgtatgtgtggcatccaagtggcaattattttattttaa 100  Q
    |||| ||| ||| ||||||| ||||||   |||||||||| ||| ||||| |||  |||||||||  ||||||||||| ||||||||||| |||||||||    
T  24610037 cccacttttttggtgatttgtcacatttgtgcatatgtggcatgagctgattgtacaaacttgtacatgtggcatccatgtggcaattatattattttaa 24610136  T
Q  101 ctaatt 106  Q
     |||||    
T  24610137 ataatt 24610142  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 45 - 106
Target Start/End: Complemental strand, 35911785 - 35911724
Alignment:
Q  45 tgctgactgtgtaaacttgtatgtgtggcatccaagtggcaattattttattttaactaatt 106  Q
    ||||||| ||| |||| ||||  ||||||||||| |||||||||||||||||||||||||||    
T  35911785 tgctgacggtgcaaacatgtacatgtggcatccaggtggcaattattttattttaactaatt 35911724  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 68 - 106
Target Start/End: Complemental strand, 34934621 - 34934583
Alignment:
Q  68 tgtggcatccaagtggcaattattttattttaactaatt 106  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  34934621 tgtggcatccaggtggcaattattttattttaactaatt 34934583  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 24422633 - 24422738
Alignment:
Q  1 cccattttcttgctgatttggcacattctcgcatatgtggtatgtgctgactgtgtaaacttgtatgtgtggcatccaagtggcaattattttattttaa 100  Q
    |||| ||||||||| ||||| | ||||   || ||||||| || |||||||| || |||| ||||  ||||||||||| |||||||| |||| |||||||    
T  24422633 cccactttcttgctaatttgtctcatttctgcctatgtggcatatgctgactatgcaaacatgtacatgtggcatccaggtggcaataatttaattttaa 24422732  T
Q  101 ctaatt 106  Q
    ||||||    
T  24422733 ctaatt 24422738  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 48 - 103
Target Start/End: Original strand, 27263073 - 27263128
Alignment:
Q  48 tgactgtgtaaacttgtatgtgtggcatccaagtggcaattattttattttaacta 103  Q
    ||||||||||||| |||||  |||||||| ||||| ||||||||||||||| ||||    
T  27263073 tgactgtgtaaacatgtatacgtggcatctaagtgacaattattttatttttacta 27263128  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 106
Target Start/End: Original strand, 35721283 - 35721321
Alignment:
Q  68 tgtggcatccaagtggcaattattttattttaactaatt 106  Q
    ||||||||| | |||||||||||||||||||||||||||    
T  35721283 tgtggcatctaggtggcaattattttattttaactaatt 35721321  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 17516280 - 17516385
Alignment:
Q  1 cccattttcttgctgatttggcacattctcgcatatgtggtatgtgctgactgtgtaaacttgtatgtgtggcatccaagtggcaattattttattttaa 100  Q
    |||| ||||||| ||||||| ||||||   |||||||||| ||   |||||| || |||||||||  |||| |||||| |||| ||||||||||||||||    
T  17516280 cccactttcttgatgatttgtcacatttgtgcatatgtggcattaactgactatgcaaacttgtacatgtgtcatccatgtggtaattattttattttaa 17516379  T
Q  101 ctaatt 106  Q
     |||||    
T  17516380 ataatt 17516385  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 35605512 - 35605418
Alignment:
Q  1 cccattttcttgctgatttggcacattctcgcatatgtggtatgtgctgactgtgtaaacttgtatgtgtggcatccaagtggcaattattttat 95  Q
    |||| ||||||||||||||||  |||| |||| ||| ||| | ||||||| ||| ||||||||||   |||||||||| || ||||||| |||||    
T  35605512 cccactttcttgctgatttggtgcattttcgcttatatggcaggtgctgaatgtctaaacttgtacacgtggcatccaggttgcaattaatttat 35605418  T

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