View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18534_low_1 (Length: 400)
Name: NF18534_low_1
Description: NF18534
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18534_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 13 - 384
Target Start/End: Original strand, 8311589 - 8311955
Alignment:
| Q |
13 |
agcagagatgataaagattattcttgtggccttagaaataataataccctttggatgttagcaattggtggaggcgtgtgaatctgatggtatgaagaat |
112 |
Q |
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| T |
8311589 |
agcagagatgataaagattattcttgtggccttagaaata---ataccctttggatggtagcaattggtggaggcgtgtgaatctgatggtatgaagaat |
8311685 |
T |
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| Q |
113 |
atgcagacttaatgatagaggcgtgagtttttctcagggagagagatgatataggataacgcaatttcaacgaaga-ggggtagaattaaaggatattca |
211 |
Q |
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| T |
8311686 |
atgcagacttaatgatagaggcgtgagtttttctcagggagagagatgatataggataacgcaatttcaacgaagagggggtagaattaaaggatattca |
8311785 |
T |
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| Q |
212 |
ttctttgagttttctagggatattccatgaggattagagaaggaacacgtgaagtaggacaagtatcaaaataattttgtatgagtaagaggcattagt- |
310 |
Q |
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| T |
8311786 |
ttctttgagttttctagggacattccatgaggattagagaaggaacacgtgaagtaggacaagtaccaacataattttgtatgagtaagaggcattagta |
8311885 |
T |
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| Q |
311 |
atgaacttatatatataactacacacctgacaactacatccccataagtgagtggaaaactgctccttgtattt |
384 |
Q |
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| T |
8311886 |
atgaact----tatataactacacacctgacaactacatccccataagtgagtggaaaactgctccttgtattt |
8311955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 15 - 142
Target Start/End: Complemental strand, 33793622 - 33793498
Alignment:
| Q |
15 |
cagagatgataaagattattcttgtggccttagaaataataataccctttggatgttagcaattggtggaggcgtgtgaatctgatggtatgaagaatat |
114 |
Q |
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| T |
33793622 |
cagagatgatatagatcattcttgtggccttggaaattatat---cttttggattgtaccaattggtggtggcttgtgaatctaatggtatgaagaatat |
33793526 |
T |
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| Q |
115 |
gcagacttaatgatagaggcgtgagttt |
142 |
Q |
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| T |
33793525 |
gcagacttaataatagagacgtgagttt |
33793498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 168 - 217
Target Start/End: Complemental strand, 33793359 - 33793310
Alignment:
| Q |
168 |
ataacgcaatttcaacgaagaggggtagaattaaaggatattcattcttt |
217 |
Q |
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| T |
33793359 |
ataacacaatttcaactaagaggggaagaattaaagaatattcattcttt |
33793310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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