View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18534_low_2 (Length: 375)

Name: NF18534_low_2
Description: NF18534
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18534_low_2
NF18534_low_2
[»] chr7 (3 HSPs)
chr7 (9-354)||(39954595-39954940)
chr7 (252-354)||(10575474-10575576)
chr7 (299-354)||(354492-354547)
[»] chr3 (7 HSPs)
chr3 (252-351)||(24982136-24982235)
chr3 (252-345)||(31825550-31825643)
chr3 (260-351)||(25085128-25085219)
chr3 (252-354)||(24919879-24919981)
chr3 (275-351)||(21584613-21584689)
chr3 (260-351)||(24497260-24497351)
chr3 (266-354)||(24923467-24923555)
[»] chr4 (3 HSPs)
chr4 (251-354)||(53328801-53328904)
chr4 (275-354)||(22898640-22898719)
chr4 (275-354)||(22950308-22950387)
[»] chr2 (1 HSPs)
chr2 (269-354)||(41027659-41027744)
[»] chr5 (1 HSPs)
chr5 (251-354)||(26358540-26358643)
[»] chr8 (1 HSPs)
chr8 (252-354)||(14261025-14261127)


Alignment Details
Target: chr7 (Bit Score: 342; Significance: 0; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 9 - 354
Target Start/End: Original strand, 39954595 - 39954940
Alignment:
Q  9 gagatgaaacaaatgtaaaattcaaacagattatattctcacaaaattaaaagtaaaagcaaatgtgctaggttcaaagtaatttcagcaaagacaaaat 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39954595 gagatgaaacaaatgtaaaattcaaacagattatattctcacaaaattaaaagtaaaagcaaatgtgctaggttcaaagtaatttcagcaaagacaaaat 39954694  T
Q  109 tcattcattcatcgttaagaattaagatacaagtccaaatactagaaccacagaactaagcattcaaccagatctaagactactaaatttatattaacca 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  39954695 tcattcattcatcgttaagaattaagatacaagtccaaatactagaaccacaggactaagcattcaaccagatctaagactactaaatttatattaacca 39954794  T
Q  209 gatttagaactaaatcgaccagaacaaactaaaccctaaatttaaccaccgaaaccgtagagagtccttccctgcctcttgagagcatacacaacatcca 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39954795 gatttagaactaaatcgaccagaacaaactaaaccctaaatttaaccaccgaaaccgtagagagtccttccctgcctcttgagagcatacacaacatcca 39954894  T
Q  309 tggcggtaacagttttcctcctagcatgctcagtgtaagtaacagc 354  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  39954895 tggcggtaacagttttcctcctagcatgctcagtgtaagtaacagc 39954940  T

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Target: chr7; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 252 - 354
Target Start/End: Complemental strand, 10575576 - 10575474
Alignment:
Q  252 aaccaccgaaaccgtagagagtccttccctgcctcttgagagcatacacaacatccatggcggtaacagttttcctcctagcatgctcagtgtaagtaac 351  Q
    ||||||||||||| ||||| || ||||| || ||||| || || || ||||||||||| || || |||||||||||||| ||||||||||||||||||||    
T  10575576 aaccaccgaaaccatagagggttcttccttgtctcttaagcgcgtaaacaacatccatagcagtcacagttttcctcctcgcatgctcagtgtaagtaac 10575477  T
Q  352 agc 354  Q
    |||    
T  10575476 agc 10575474  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 299 - 354
Target Start/End: Complemental strand, 354547 - 354492
Alignment:
Q  299 acaacatccatggcggtaacagttttcctcctagcatgctcagtgtaagtaacagc 354  Q
    ||||||||||| || || | ||| |||||||| |||||||||||||||||||||||    
T  354547 acaacatccatagcagtcagagtcttcctccttgcatgctcagtgtaagtaacagc 354492  T

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Target: chr3 (Bit Score: 56; Significance: 4e-23; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 252 - 351
Target Start/End: Complemental strand, 24982235 - 24982136
Alignment:
Q  252 aaccaccgaaaccgtagagagtccttccctgcctcttgagagcatacacaacatccatggcggtaacagttttcctcctagcatgctcagtgtaagtaac 351  Q
    ||||||||||||| ||||| || ||||| || ||||| | |||||| ||||||||||||||||||||||| ||||||||||| ||||||||||| |||||    
T  24982235 aaccaccgaaaccatagagggttcttccttgtctcttcaaagcatagacaacatccatggcggtaacagtcttcctcctagcgtgctcagtgtatgtaac 24982136  T

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Target: chr3; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 252 - 345
Target Start/End: Original strand, 31825550 - 31825643
Alignment:
Q  252 aaccaccgaaaccgtagagagtccttccctgcctcttgagagcatacacaacatccatggcggtaacagttttcctcctagcatgctcagtgta 345  Q
    |||| ||||| || ||||| || |||||||||||||| | |||||| ||||||||||| |||||||| || ||||||||||| |||||||||||    
T  31825550 aacctccgaatccatagagggttcttccctgcctcttcaaagcatagacaacatccatcgcggtaactgtcttcctcctagcgtgctcagtgta 31825643  T

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Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 260 - 351
Target Start/End: Complemental strand, 25085219 - 25085128
Alignment:
Q  260 aaaccgtagagagtccttccctgcctcttgagagcatacacaacatccatggcggtaacagttttcctcctagcatgctcagtgtaagtaac 351  Q
    ||||| ||||| || |||||||| ||||| | |||||| |||||||||||||| || ||||| |||||||| || ||||||||||| |||||    
T  25085219 aaaccatagagggttcttccctgtctcttcaaagcatagacaacatccatggctgtcacagtcttcctccttgcgtgctcagtgtatgtaac 25085128  T

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Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 252 - 354
Target Start/End: Original strand, 24919879 - 24919981
Alignment:
Q  252 aaccaccgaaaccgtagagagtccttccctgcctcttgagagcatacacaacatccatggcggtaacagttttcctcctagcatgctcagtgtaagtaac 351  Q
    |||| ||||| || ||||| || |||||||||||||| | |||||| || ||||||||||| || || || ||||||||||| ||||||||||| || ||    
T  24919879 aacctccgaatccatagagggttcttccctgcctcttcaaagcatagacgacatccatggctgtcactgtcttcctcctagcgtgctcagtgtatgtcac 24919978  T
Q  352 agc 354  Q
    |||    
T  24919979 agc 24919981  T

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Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 275 - 351
Target Start/End: Original strand, 21584613 - 21584689
Alignment:
Q  275 cttccctgcctcttgagagcatacacaacatccatggcggtaacagttttcctcctagcatgctcagtgtaagtaac 351  Q
    ||||| |||||||| | |||||| ||||||||||| || || ||||| |||||||| |||||||||||||| |||||    
T  21584613 cttccttgcctcttcaaagcataaacaacatccatagcagtcacagtcttcctccttgcatgctcagtgtacgtaac 21584689  T

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Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 260 - 351
Target Start/End: Original strand, 24497260 - 24497351
Alignment:
Q  260 aaaccgtagagagtccttccctgcctcttgagagcatacacaacatccatggcggtaacagttttcctcctagcatgctcagtgtaagtaac 351  Q
    ||||| ||||| || ||||| || ||||| | |||||| |||||||||||||| || ||||| |||||||| || ||||||||||| |||||    
T  24497260 aaaccatagagggttcttccttgtctcttcaaagcatagacaacatccatggctgtcacagtcttcctccttgcgtgctcagtgtatgtaac 24497351  T

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Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 266 - 354
Target Start/End: Original strand, 24923467 - 24923555
Alignment:
Q  266 tagagagtccttccctgcctcttgagagcatacacaacatccatggcggtaacagttttcctcctagcatgctcagtgtaagtaacagc 354  Q
    ||||| || |||||||| ||||| | |||||| |||||||||||||| || || || |||||||| || ||||||||||| || |||||    
T  24923467 tagagggttcttccctgtctcttcaaagcatagacaacatccatggctgtcactgtcttcctccttgcgtgctcagtgtatgtcacagc 24923555  T

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Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 251 - 354
Target Start/End: Complemental strand, 53328904 - 53328801
Alignment:
Q  251 taaccaccgaaaccgtagagagtccttccctgcctcttgagagcatacacaacatccatggcggtaacagttttcctcctagcatgctcagtgtaagtaa 350  Q
    ||||| ||||||||||| |||||||||||||||||||||||||| || ||||||||||| || |||||||| || |  | ||||||||| ||||| || |    
T  53328904 taacccccgaaaccgtaaagagtccttccctgcctcttgagagcgtaaacaacatccattgcagtaacagtcttacggcgagcatgctctgtgtatgtga 53328805  T
Q  351 cagc 354  Q
    ||||    
T  53328804 cagc 53328801  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 275 - 354
Target Start/End: Complemental strand, 22898719 - 22898640
Alignment:
Q  275 cttccctgcctcttgagagcatacacaacatccatggcggtaacagttttcctcctagcatgctcagtgtaagtaacagc 354  Q
    |||||||| |||||||| ||||| || |||||||| || ||||| || ||||| ||||| |||||||||||||| |||||    
T  22898719 cttccctgtctcttgagggcataaaccacatccatagcagtaaccgtcttccttctagcgtgctcagtgtaagtcacagc 22898640  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 275 - 354
Target Start/End: Complemental strand, 22950387 - 22950308
Alignment:
Q  275 cttccctgcctcttgagagcatacacaacatccatggcggtaacagttttcctcctagcatgctcagtgtaagtaacagc 354  Q
    |||||||| |||||||| ||||| || |||||||| || ||||| || ||||| ||||| |||||||||||||| |||||    
T  22950387 cttccctgtctcttgagggcataaaccacatccatagcagtaaccgtcttccttctagcgtgctcagtgtaagtcacagc 22950308  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 269 - 354
Target Start/End: Complemental strand, 41027744 - 41027659
Alignment:
Q  269 agagtccttccctgcctcttgagagcatacacaacatccatggcggtaacagttttcctcctagcatgctcagtgtaagtaacagc 354  Q
    ||||||||||| || ||||| |  ||||| ||||||||||| || |||||||| || |||||||| ||||| ||||||||||||||    
T  41027744 agagtccttccttgtctcttcaatgcataaacaacatccatagcagtaacagtctttctcctagcgtgctctgtgtaagtaacagc 41027659  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 251 - 354
Target Start/End: Original strand, 26358540 - 26358643
Alignment:
Q  251 taaccaccgaaaccgtagagagtccttccctgcctcttgagagcatacacaacatccatggcggtaacagttttcctcctagcatgctcagtgtaagtaa 350  Q
    ||||| || ||||| || || |||||||| ||||||||||| ||||| ||||||||||| || ||||| ||||| |  | |||||| ||||||||||| |    
T  26358540 taacccccaaaaccataaagggtccttccttgcctcttgagcgcataaacaacatccatagcagtaactgttttgcgacgagcatgttcagtgtaagtga 26358639  T
Q  351 cagc 354  Q
    ||||    
T  26358640 cagc 26358643  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 252 - 354
Target Start/End: Original strand, 14261025 - 14261127
Alignment:
Q  252 aaccaccgaaaccgtagagagtccttccctgcctcttgagagcatacacaacatccatggcggtaacagttttcctcctagcatgctcagtgtaagtaac 351  Q
    |||| |||||||| || | ||||||||| || ||||| |  ||||| ||||||||||| || ||||| || |||||||| ||||| ||||| || |||||    
T  14261025 aacctccgaaaccatacaaagtccttccttgtctcttcaacgcataaacaacatccatagcagtaaccgtcttcctcctcgcatgttcagtatacgtaac 14261124  T
Q  352 agc 354  Q
    |||    
T  14261125 agc 14261127  T

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