View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18534_low_3 (Length: 267)
Name: NF18534_low_3
Description: NF18534
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18534_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 46937180 - 46937436
Alignment:
| Q |
1 |
actaaccgtatcttgaatagtttgcaatgaggtttgattttatggtgaagatatcaacatatgtgacatttgaatctggatattgaccctgcaatttact |
100 |
Q |
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| T |
46937180 |
actaaccgtatcttgaatagtttgcaatgaggtttgattttatggtgaagatatcaacatatgtgacatttgaatctggatattgaccctgcaatttact |
46937279 |
T |
|
| Q |
101 |
acacagagcatgaagttgtaggttaaaggttttagcagcttggttatgcccactaacacatcctagttcatcaagctttgatggatcagttccaaatttg |
200 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46937280 |
acacagagcatgaagttgtaggttaaaggttttaacagcttggttatgcccactaacacatcctagttcatcaagctttgatggatcagttccaaatttg |
46937379 |
T |
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| Q |
201 |
gctacattctgagctaagcatccaagaggacctgtattgtgtatccagtattatcta |
257 |
Q |
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| T |
46937380 |
gcaacattctgagctaagcatccaagaggacctgtattgtgtatccagaaatatcta |
46937436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 64; Significance: 5e-28; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 18 - 197
Target Start/End: Complemental strand, 36639596 - 36639417
Alignment:
| Q |
18 |
tagtttgcaatgaggtttgattttatggtgaagatatcaacatatgtgacatttgaatctggatattgaccctgcaatttactacacagagcatgaagtt |
117 |
Q |
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| T |
36639596 |
tagtttgcaatgaggtctaattttatggtaaagatatcaacatatgtaacatttacatctggatactggccctgcaatttactgcagaaatcttgaagat |
36639497 |
T |
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| Q |
118 |
gtaggttaaaggttttagcagcttggttatgcccactaacacatcctagttcatcaagctttgatggatcagttccaaat |
197 |
Q |
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| T |
36639496 |
attgattaaaagctttagcagctaagttatgttaacgaagacatcctagttcatcaagtttcgatggatcagtgccaaat |
36639417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 13 - 235
Target Start/End: Complemental strand, 36634833 - 36634611
Alignment:
| Q |
13 |
ttgaatagtttgcaatgaggtttgattttatggtgaagatatcaacatatgtgacatttgaatctggatattgaccctgcaatttactacacagagcatg |
112 |
Q |
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|||| |||||||||||||||| |||||||||| ||||||||||||||||| |||||| |||| |||| || ||||||||||| |||| ||| || |
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| T |
36634833 |
ttgagtagtttgcaatgaggtccaattttatggtaaagatatcaacatatgtaacatttagatctagatactggccctgcaattttgcccacaaagcttg |
36634734 |
T |
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| Q |
113 |
aagttgtaggttaaaggttttagcagcttggttatgcccactaacacatcctagttcatcaagctttgatggatcagttccaaatttggctacattctga |
212 |
Q |
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| T |
36634733 |
caactgtagattaaaggccttagcagcttggttgtgtgcaccaagacatcctagttcatcaatctttgatttatcatggccaaatgtggcaacattttga |
36634634 |
T |
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| Q |
213 |
gctaagcatccaagaggacctgt |
235 |
Q |
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| ||||||||||| |||||||| |
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| T |
36634633 |
cccaagcatccaagtggacctgt |
36634611 |
T |
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