View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18534_low_5 (Length: 249)
Name: NF18534_low_5
Description: NF18534
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18534_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 62 - 239
Target Start/End: Original strand, 37602064 - 37602238
Alignment:
| Q |
62 |
ttattgaaatagatgtaaatgagtaggcatcagctactaccattaaaatatggctgcaagttctacacatgaataatgccatcaaacccactactttaca |
161 |
Q |
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| T |
37602064 |
ttattcaaatagatgtaaatgaataggcatcagctactaccatcaaaatatggctgcaagttctacacatgagtaatg-catcaaatccactactttacg |
37602162 |
T |
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| Q |
162 |
atctaaatgtaacgtgtccaattggagctttttctacaaatctgcaaattgtacttcaaatccaatgcatggcctatg |
239 |
Q |
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| T |
37602163 |
gtccaaatgtaacgtgtcatattggagctttt--tacaaatctgcaaattgtacttcaaatctaatgcatggcctatg |
37602238 |
T |
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Target: chr1 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 62 - 239
Target Start/End: Complemental strand, 46558927 - 46558753
Alignment:
| Q |
62 |
ttattgaaatagatgtaaatgagtaggcatcagctactaccattaaaatatggctgcaagttctacacatgaataatgccatcaaacccactactttaca |
161 |
Q |
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| T |
46558927 |
ttattcaaatagatgtaaatgaataggcatcagctactaccatcaaaatatggctgcaagttctacacatgagtaatg-catcaaatccactactttacg |
46558829 |
T |
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| Q |
162 |
atctaaatgtaacgtgtccaattggagctttttctacaaatctgcaaattgtacttcaaatccaatgcatggcctatg |
239 |
Q |
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| T |
46558828 |
gtccaaatgtaacgtgtcatattggagctttt--tacaaatctgcaaattgtacttcaaatctaatgcatggcctatg |
46558753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 58 - 161
Target Start/End: Original strand, 22778625 - 22778728
Alignment:
| Q |
58 |
cacattattgaaatagatgtaaatgagtaggcatcagctactaccattaaaatatggctgcaagttctacacatgaataatgccatcaaa-cccactact |
156 |
Q |
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||||||||| |||||||||||||||| ||||||||| ||||| ||| |||||||||||||||||||||||| ||||||||| ||||||| ||||||||| |
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| T |
22778625 |
cacattattcaaatagatgtaaatgaataggcatcaactacttacatcaaaatatggctgcaagttctacacgtgaataatg-catcaaaccccactact |
22778723 |
T |
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| Q |
157 |
ttaca |
161 |
Q |
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||||| |
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| T |
22778724 |
ttaca |
22778728 |
T |
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