View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18535_high_2 (Length: 454)

Name: NF18535_high_2
Description: NF18535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18535_high_2
NF18535_high_2
[»] chr6 (15 HSPs)
chr6 (155-437)||(13910038-13910320)
chr6 (200-407)||(14082991-14083199)
chr6 (244-407)||(13474415-13474580)
chr6 (253-385)||(13876522-13876656)
chr6 (251-407)||(13894610-13894768)
chr6 (201-363)||(14108697-14108861)
chr6 (277-407)||(13930747-13930878)
chr6 (251-387)||(13864003-13864141)
chr6 (261-407)||(14020967-14021117)
chr6 (278-407)||(14106013-14106143)
chr6 (236-339)||(14023763-14023864)
chr6 (62-137)||(13871783-13871858)
chr6 (306-422)||(14013600-14013716)
chr6 (258-328)||(14045746-14045817)
chr6 (81-114)||(13876668-13876701)


Alignment Details
Target: chr6 (Bit Score: 156; Significance: 1e-82; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 155 - 437
Target Start/End: Original strand, 13910038 - 13910320
Alignment:
Q  155 caaaatgtaataaattataaaatgaaggtgtaattttgaaaattcaaattattagttttaatttctttctatagaagaaaaaacttgttagtagactgca 254  Q
    |||||||||||||||||  |||||||||| ||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| |||||||||    
T  13910038 caaaatgtaataaattaacaaatgaaggtttaattttgaaaattcaaattattagttttaattgctttctgtagaagaaaaaacttgttaatagactgca 13910137  T
Q  255 tgagaaaaatgacacatgtattttttacttgtagaatacttcaccaatgtttattgcataaataaattacacagaatacaaaaggtaatggaagttacaa 354  Q
     |||||||  |   | | | |||||||||||||||||||||||||||||||||||| ||   | ||||| | |||||||||||||||  | |||||||||    
T  13910138 ggagaaaacagcgtc-tattttttttacttgtagaatacttcaccaatgtttattgtatgcttgaattatagagaatacaaaaggtatcgcaagttacaa 13910236  T
Q  355 ctcaattca-caagagactaatacataggagataaataacataatcatatattatattacaaagagaaagcccaccattctatt 437  Q
    ||||||||| || |||||| ||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13910237 ctcaattcaacatgagactgatacatgagagataaataacataatcatatattatattacaaagagaaagcccaccattctatt 13910320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 200 - 407
Target Start/End: Original strand, 14082991 - 14083199
Alignment:
Q  200 aaattattagttttaatttctttctatagaagaaaaaacttgttagtagactgcatgagaaaaatgacacatgtattttttacttgtagaatacttcacc 299  Q
    ||||||||||| ||||||  ||| |||||| ||| | |||| | |||||| ||||||| |||||||||||||||| |||||||||||||||||||||| |    
T  14082991 aaattattagtcttaattgatttttatagacgaatatacttctaagtagaatgcatgaaaaaaatgacacatgtaatttttacttgtagaatacttcatc 14083090  T
Q  300 aatgtttattgcataaataaattacacagaatacaaaaggtaatggaagttacaactcaattc-acaagagactaatacataggagataaataacataat 398  Q
    | |||||||||||||||||||||||| ||||||||||||||| || | ||| ||||||||||| ||||||||||| ||||||  |||||||  ||||||     
T  14083091 attgtttattgcataaataaattacagagaatacaaaaggtactgcatgttgcaactcaattcaacaagagactattacataaaagataaaagacataac 14083190  T
Q  399 catatatta 407  Q
    || ||||||    
T  14083191 cacatatta 14083199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 244 - 407
Target Start/End: Complemental strand, 13474580 - 13474415
Alignment:
Q  244 agtagactgcatgagaaaaatgacacatgtattttttacttgtagaatacttcaccaatgtttattgcata--aataaattacacagaatacaaaaggta 341  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||  ||||||||||| |||||||||||  ||    
T  13474580 agtagaatgcatgagaaaaatgacacatgtattttttacttgtagaatacaccaccaatgtttattgcatatgaataaattacagagaatacaaaatcta 13474481  T
Q  342 atggaagttacaactcaattc-acaagagactaatacataggagataaataacataatcatatatta 407  Q
     || ||||| |||||| |||| |||||||||||  ||||| ||||||||| ||||||||| ||||||    
T  13474480 ttgcaagtt-caactcgattcaacaagagactataacataagagataaatgacataatcacatatta 13474415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 253 - 385
Target Start/End: Complemental strand, 13876656 - 13876522
Alignment:
Q  253 catgagaaaaatgacacatgtattttttacttgtagaatacttcaccaatgtttattgcataaataaattacacagaatacaaaaggtaatggaagttac 352  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||  | || ||||| |    
T  13876656 catgagaaaaatgacacatgtattttctacttgtagaatacttcaccaatgtttatggcataaataaattacacagaatacaaaagaaattgcaagttgc 13876557  T
Q  353 -aactcaattc-acaagagactaatacataggaga 385  Q
     |||||||||| ||||||||||| |||||| ||||    
T  13876556 aaactcaattcaacaagagactactacataagaga 13876522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 251 - 407
Target Start/End: Complemental strand, 13894768 - 13894610
Alignment:
Q  251 tgcatgagaaaaatgacacatgtattttttacttgtagaatacttcaccaatgtttattgcataaataaattacacagaatacaaaaggtaatggaagtt 350  Q
    |||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | || |||||    
T  13894768 tgcatgaggaaaatgacacatgtattttgtacttgtagaatacttcaccaatgtttattgcataaataaattacagagaatacaaaaggaattgcaagtt 13894669  T
Q  351 ac-aactcaattc-acaagagactaatacataggagataaataacataatcatatatta 407  Q
     | ||||| |||| ||||||||||| ||||||  ||| |||| |||| | |||||||||    
T  13894668 gcaaactccattcaacaagagactagtacataaaagagaaatgacatgaccatatatta 13894610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 201 - 363
Target Start/End: Original strand, 14108697 - 14108861
Alignment:
Q  201 aattattagttttaatttctttctatagaagaaaaaacttgttagtagactgcatgagaaaaatgacacatgtatttt-ttacttgtagaatacttcacc 299  Q
    |||||||||| ||||||| ||| |||||| ||  | |||| | |||||| |||||||||||||||||| ||||||||| |||||||||||||||||||||    
T  14108697 aattattagtcttaatttatttttatagacgatgatacttctaagtagaatgcatgagaaaaatgacaaatgtatttttttacttgtagaatacttcacc 14108796  T
Q  300 aatgtttattgcataaataaattacacag-aatacaaaaggtaatggaagttacaactcaattca 363  Q
     | ||||||||||| ||||||||||| || ||||||||||||| || ||||| ||||||||||||    
T  14108797 gaagtttattgcatgaataaattacagagaaatacaaaaggtattgcaagttgcaactcaattca 14108861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 277 - 407
Target Start/End: Original strand, 13930747 - 13930878
Alignment:
Q  277 ttttacttgtagaatacttcaccaatgtttattgcataaataaattacacagaatacaaaaggtaatggaagttacaactcaattc-acaagagactaat 375  Q
    ||||||| || ||||||||||| |||||||||||||||||||||| ||| ||||||||||||||| || ||||||||||||||||| |||||||||||||    
T  13930747 ttttactcgttgaatacttcacaaatgtttattgcataaataaatgacagagaatacaaaaggtagtgcaagttacaactcaattcaacaagagactaat 13930846  T
Q  376 acataggagataaataacataatcatatatta 407  Q
    ||||| |||| |||| |||||| || ||||||    
T  13930847 acataagagaaaaatgacataaccacatatta 13930878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 251 - 387
Target Start/End: Complemental strand, 13864141 - 13864003
Alignment:
Q  251 tgcatgagaaaaatgacacatgtattttttacttgtagaatacttcaccaatgtttattgcataaataaattacacagaatacaaaaggtaatggaagtt 350  Q
    |||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||    || |||||    
T  13864141 tgcatgaggaaaatgacacatgtattttctacttgtagaatacttcaccaatgtttatggcataaataaattacacagaatagaaaagaacttgcaagtt 13864042  T
Q  351 ac-aactcaattc-acaagagactaatacataggagata 387  Q
     | |||||||||| ||||||||||| |||||| ||||||    
T  13864041 gcaaactcaattcaacaagagactactacataagagata 13864003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 261 - 407
Target Start/End: Original strand, 14020967 - 14021117
Alignment:
Q  261 aaatgacacatgtattttttacttgtagaatacttcaccaatgtttattgcataaataaattacacag----aatacaaaaggtaatggaagttacaact 356  Q
    |||||||||||||||||| |||||||||||||||||| ||||||||||||||| ||||||||||| ||    ||||||||||||| || ||||| |||||    
T  14020967 aaatgacacatgtatttt-tacttgtagaatacttcaacaatgtttattgcatgaataaattacagagaattaatacaaaaggtattgcaagttgcaact 14021065  T
Q  357 caattc-acaagagactaatacataggagataaataacataatcatatatta 407  Q
    |||||| ||||||||||| |||||| ||||||||| |||||| || ||||||    
T  14021066 caattcaacaagagactattacataagagataaatgacataaccacatatta 14021117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 278 - 407
Target Start/End: Original strand, 14106013 - 14106143
Alignment:
Q  278 tttacttgtagaatacttcaccaatgtttattgcataaataaattacacagaatacaaaaggtaatggaagttacaactcaattc-acaagagactaata 376  Q
    |||||||||| |||||| |||||||||||||||||| ||||||||||| ||||||||||||| | || ||||| ||||||||||| || | |||||| ||    
T  14106013 tttacttgtaaaatactccaccaatgtttattgcatgaataaattacagagaatacaaaaggcattgcaagttgcaactcaattcaacgacagactagta 14106112  T
Q  377 cataggagataaataacataatcatatatta 407  Q
    |||| ||||||||  |||||| |||||||||    
T  14106113 cataagagataaacgacataaccatatatta 14106143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 236 - 339
Target Start/End: Original strand, 14023763 - 14023864
Alignment:
Q  236 aacttgttagtagactgcatgagaaaaatgacacatgtattttttacttgtagaatacttcaccaatgtttattgcataaataaattacacagaatacaa 335  Q
    ||||||| |||||| | ||||||||||||||||| |||  | |||||||||| ||||||||| ||||||||||||||| ||||||||||| |||||||||    
T  14023763 aacttgtgagtagaatacatgagaaaaatgacacgtgt--tgtttacttgtataatacttcatcaatgtttattgcatgaataaattacagagaatacaa 14023860  T
Q  336 aagg 339  Q
    ||||    
T  14023861 aagg 14023864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 62 - 137
Target Start/End: Complemental strand, 13871858 - 13871783
Alignment:
Q  62 taagtataagtaccttttcattttcagttgcttttcatgtagttagtatcatgtagaatagtaaaatactaaaaaa 137  Q
    ||||||| ||||||||||| |||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||    
T  13871858 taagtattagtaccttttctttttgagttggttttcatgtagttagtatcatgtagaataataaaatactaaaaaa 13871783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 306 - 422
Target Start/End: Original strand, 14013600 - 14013716
Alignment:
Q  306 tattgcataaataaattacacagaatacaaaaggtaatggaagttacaactcaattc-acaagagactaatacataggagataaataacataatcatata 404  Q
    ||||||||||||||| |||| |||||||||| |||| || | | | ||||||||||| |  ||| ||||||||||| | ||||||| |||||| ||||||    
T  14013600 tattgcataaataaaatacagagaatacaaatggtattgcatgctgcaactcaattcaagtagaaactaatacatatgtgataaatgacataaccatata 14013699  T
Q  405 ttatattacaaagagaaa 422  Q
     ||||||| |||||||||    
T  14013700 -tatattagaaagagaaa 14013716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 258 - 328
Target Start/End: Original strand, 14045746 - 14045817
Alignment:
Q  258 gaaaaatgacacatgtatttttt-acttgtagaatacttcaccaatgtttattgcataaataaattacacag 328  Q
    ||||||||| | ||||||||||| |||| ||||||||||||  |||||||||||||||||||  ||||||||    
T  14045746 gaaaaatgagaaatgtatttttttacttttagaatacttcattaatgtttattgcataaatatgttacacag 14045817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 81 - 114
Target Start/End: Complemental strand, 13876701 - 13876668
Alignment:
Q  81 attttcagttgcttttcatgtagttagtatcatg 114  Q
    ||||||||||| ||||||||||||||||||||||    
T  13876701 attttcagttggttttcatgtagttagtatcatg 13876668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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