View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18535_low_4 (Length: 344)
Name: NF18535_low_4
Description: NF18535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18535_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 21 - 266
Target Start/End: Complemental strand, 53424623 - 53424378
Alignment:
| Q |
21 |
tggttacacaatctatgacaagattaaaatggtgcaagagatgggtggattaggtcttgttcgtattattgaccaagaaggaggagaggcaagaaattat |
120 |
Q |
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| T |
53424623 |
tggttacacaatctatgacaagattaaaatggcgcaagagatgggtggattaggtcttgttcatattattgaccaagaaggaggagaggcaagaaattat |
53424524 |
T |
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| Q |
121 |
gatttcccagcaaccgtggtaagaacaaaagatgctgccacaatcctccaatatgtcaattcaacaaggtatgcattttaaagttttttaatttaattta |
220 |
Q |
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| T |
53424523 |
gacttcccagcaaccgtggtaagaacaagagatgctgccacaatcctccaatatgtcaattcaacaaggtatgcattttaaagttttttaatttaattta |
53424424 |
T |
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| Q |
221 |
cggtatatcaagaagattaatggatatacaccatcaatataaagtt |
266 |
Q |
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| T |
53424423 |
cggtatatcaagaagattaatggatatacaccatcaatataaagtt |
53424378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 257 - 344
Target Start/End: Complemental strand, 53424158 - 53424071
Alignment:
| Q |
257 |
atataaagttattttacactcacattcaatcagaactattcaatttgtgattggttttcaatgtaatccaattttacactttgagttc |
344 |
Q |
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| T |
53424158 |
atataaagttattttacactcacattcaattagaactattcaatttgtgattggttttcaatgtaatccaattttacactttgagttc |
53424071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 51 - 210
Target Start/End: Original strand, 48373972 - 48374134
Alignment:
| Q |
51 |
ggtgcaagagatgggtggattaggtcttgttcgtattattgaccaagaaggaggagaggcaagaaattatg---atttcccagcaaccgtggtaagaaca |
147 |
Q |
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| T |
48373972 |
ggtgcaagaggcgggtggattaggtcttgttcatattactgaccaggatggagctgtggcaaatatttatgcagacttcccagcaacagtggtaagatca |
48374071 |
T |
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| Q |
148 |
aaagatgctgccacaatcctccaatatgtcaattcaacaaggtatgcattttaaagtttttta |
210 |
Q |
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| T |
48374072 |
aaagatgttgtcacactcctcaaatatgtcaattcaacgaggtaagcattttaaaggttttta |
48374134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 38 - 196
Target Start/End: Complemental strand, 53431755 - 53431594
Alignment:
| Q |
38 |
acaagattaaaatggtgcaagagatgggtggattaggtcttgttcgtattattgaccaagaaggaggagaggcaagaaattatg---atttcccagcaac |
134 |
Q |
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| T |
53431755 |
acaaaattaaaacggtgcaagggatgggtggattaggtcttgttcatattactgaccaggatggagctatgatacgtagttatggagacttcccagcaac |
53431656 |
T |
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| Q |
135 |
cgtggtaagaacaaaagatgctgccacaatcctccaatatgtcaattcaacaaggtatgcat |
196 |
Q |
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| T |
53431655 |
agtggtaagatcaaaagatgttgccacactcctccaatacgccaattcaacaaggtatgcat |
53431594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 161 - 206
Target Start/End: Complemental strand, 53308955 - 53308910
Alignment:
| Q |
161 |
caatcctccaatatgtcaattcaacaaggtatgcattttaaagttt |
206 |
Q |
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| T |
53308955 |
caatactccaatatgtcaattcaacaaggtaagcattataaagttt |
53308910 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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