View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18536_high_10 (Length: 288)
Name: NF18536_high_10
Description: NF18536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18536_high_10 |
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Alignment Details
Target: chr2 (Bit Score: 270; Significance: 1e-151; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 2 - 283
Target Start/End: Complemental strand, 12510531 - 12510250
Alignment:
| Q |
2 |
aactatacgcatatatgttatccttttctgtagaagtttatccaatagagaaaacgtgttcctgtggattaaatatacaaacaaaatttaaattcctttc |
101 |
Q |
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| T |
12510531 |
aactatatgcatatatgttatccttttctgtagaagtttatccaataaagaaaacgtgttcctgtggattaaatatacaaacaaaatttaaattcctttc |
12510432 |
T |
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| Q |
102 |
atcataagataatcagactttttgatccatcacttatatgcataaactatctgaatgatatactgcaggataatgcagaaaaatgtataggatcatcttt |
201 |
Q |
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| T |
12510431 |
atcataagataatcagactttttgatccatcacttatatgcataaactatctgaatgatatactgcaggataatgcagaaaaatgtataggatcatcttt |
12510332 |
T |
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| Q |
202 |
ggaacgtgtgcttacaggtgtaatgtgtcacattggtcagaaaccatgtatttgctcagacattgatccaagtattatctac |
283 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
12510331 |
ggaacgtgtgcttacaggtgtaatgtgtcacattggtcagaaaccatgtatttgctcagacattgatccaagtattagctac |
12510250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 95 - 273
Target Start/End: Complemental strand, 12482771 - 12482593
Alignment:
| Q |
95 |
tcctttcatcataagataatcagactttttgatccatcacttatatgcataaactatctgaatgatatactgcaggataatgcagaaaaatgtataggat |
194 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| |||||||| || ||||||||||||| ||||||||||| || | |
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| T |
12482771 |
tcctttcatcataagataatctgactttttgatccatcacttaaatgcataaactacttgaatgatctaatgcaggataatgctgaaaaatgtatcgggt |
12482672 |
T |
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| Q |
195 |
catctttggaacgtgtgcttacaggtgtaatgtgtcacattggtcagaaaccatgtatttgctcagacattgatccaag |
273 |
Q |
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| T |
12482671 |
cgtctttggagcatgtgcttacaggtgtaatgtgtcacattcgtcagaaaccatgtatctgttcagacattgatccaag |
12482593 |
T |
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