View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18536_high_15 (Length: 265)
Name: NF18536_high_15
Description: NF18536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18536_high_15 |
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Alignment Details
Target: chr6 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 16 - 253
Target Start/End: Complemental strand, 19751468 - 19751232
Alignment:
| Q |
16 |
aaacctgcaaaactgtaactcggtattagttaacttgagcattaagctacactattactatagtgtatcgtacataaagtgagtaatctaaccatatagt |
115 |
Q |
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| T |
19751468 |
aaacctgcaaaactgtaactcggtattagttaacttgagcttta-gctacactattactatagtgtatggtacatagagtgagtaatctaaccatatagt |
19751370 |
T |
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| Q |
116 |
agttagtgccagctgttaattggtaggaagatctaatagctagttagaacaatgacttctaaatatagatgaaatgtaacaaactcgacacaattcgata |
215 |
Q |
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| T |
19751369 |
agttagtgccagctgttaattggtaggaagatctaatagctagttagaacaatgacttctatatatagatgaaatgtaacaaactcgacacaattcgata |
19751270 |
T |
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| Q |
216 |
aacagttttcattatctcagatttcttcttcttcccta |
253 |
Q |
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| T |
19751269 |
aacagttttcattttctcagatttcttcttcttcccta |
19751232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 131 - 247
Target Start/End: Complemental strand, 1820390 - 1820277
Alignment:
| Q |
131 |
ttaattggtaggaagatctaatagctagttagaacaatgacttctaaatatagatgaaatgtaacaaactcgacacaattcgataaacagttttcattat |
230 |
Q |
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||||||||| ||||||||||| | |||||||||| || ||||| |||||||| || ||||||||||| ||||||||||||||||| |||| ||| | |
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| T |
1820390 |
ttaattggttggaagatctaa--gttagttagaactataggttctatatatagatcaaccgtaacaaactcaacacaattcgataaaca-ttttaatttt |
1820294 |
T |
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| Q |
231 |
ctcagatttcttcttct |
247 |
Q |
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| T |
1820293 |
ctgagatttcttcttct |
1820277 |
T |
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