View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18536_high_20 (Length: 230)

Name: NF18536_high_20
Description: NF18536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18536_high_20
NF18536_high_20
[»] chr6 (13 HSPs)
chr6 (18-147)||(26802850-26802981)
chr6 (18-148)||(27677264-27677394)
chr6 (18-148)||(27592665-27592800)
chr6 (18-148)||(27679353-27679488)
chr6 (40-117)||(27604375-27604452)
chr6 (22-148)||(27706052-27706182)
chr6 (20-113)||(27427260-27427356)
chr6 (18-120)||(28786670-28786776)
chr6 (18-120)||(28792791-28792897)
chr6 (18-86)||(27698230-27698301)
chr6 (18-125)||(28781528-28781639)
chr6 (40-99)||(26646931-26646990)
chr6 (40-99)||(26752899-26752958)
[»] scaffold0003 (1 HSPs)
scaffold0003 (20-113)||(60007-60103)
[»] chr4 (6 HSPs)
chr4 (20-113)||(18074199-18074295)
chr4 (39-97)||(18655141-18655199)
chr4 (39-97)||(18723749-18723807)
chr4 (39-97)||(18731168-18731226)
chr4 (42-98)||(18699067-18699123)
chr4 (54-98)||(18679246-18679290)
[»] scaffold0419 (1 HSPs)
scaffold0419 (18-125)||(7914-8025)
[»] scaffold0277 (2 HSPs)
scaffold0277 (18-125)||(13319-13430)
scaffold0277 (18-125)||(4356-4469)
[»] chr1 (3 HSPs)
chr1 (40-98)||(268021-268079)
chr1 (58-99)||(28164051-28164092)
chr1 (59-99)||(28127352-28127392)


Alignment Details
Target: chr6 (Bit Score: 83; Significance: 2e-39; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 18 - 147
Target Start/End: Complemental strand, 26802981 - 26802850
Alignment:
Q  18 atcacaatcgcatccatgtact---aatatattatacatttcaaactatttcgacatataaataactaatacttgtttaaaaacaaatatagaaaaggta 114  Q
    ||||||||| ||||||||||||   ||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||  |||||  |||||||    
T  26802981 atcacaatcacatccatgtactcataatatattatacatttctaactatttcaacatataaataactaatacttgtttaaaaacgtatataagaaaggta 26802882  T
Q  115 tttcccatttaaccttttaagatgagattattg 147  Q
    |||||||||||||| ||||||||||||||||||    
T  26802881 tttcccatttaacc-tttaagatgagattattg 26802850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 18 - 148
Target Start/End: Original strand, 27677264 - 27677394
Alignment:
Q  18 atcacaatcgcatccatgtactaatatattatacatttcaaactatttcgacatataaataactaatacttgtttaaaaac-aaatatagaaaaggtatt 116  Q
    ||||||||| ||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| |  ||| |||||   ||||| ||||||||||    
T  27677264 atcacaatcacatccatgtactaatgtattatacatttctaactatttcgacatataaataactaatagtacttttaaaactgtatataaaaaaggtatt 27677363  T
Q  117 tcccatttaaccttttaagatgagattattgt 148  Q
    |||| ||||||| |||||||||||||||||||    
T  27677364 tcccttttaacc-tttaagatgagattattgt 27677394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 18 - 148
Target Start/End: Original strand, 27592665 - 27592800
Alignment:
Q  18 atcacaatcgcatccatgtactaata---tattatacatttcaaactatttcgacatataaataactaa---tacttgtttaaaaacaaatatagaaaag 111  Q
    ||||||||| |||||||||||||| |   ||||||||||||| ||||||||||||||||||||||||||   |||||||||||||    ||||| |||||    
T  27592665 atcacaatcacatccatgtactaagaatgtattatacatttctaactatttcgacatataaataactaatagtacttgtttaaaactgtatataaaaaag 27592764  T
Q  112 gtatttcccatttaaccttttaagatgagattattgt 148  Q
    ||||||||| ||||||| |||||||||||||||||||    
T  27592765 gtatttcccttttaacc-tttaagatgagattattgt 27592800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 18 - 148
Target Start/End: Complemental strand, 27679488 - 27679353
Alignment:
Q  18 atcacaatcgcatccatgtactaata---tattatacatttcaaactatttcgacatataaataactaa---tacttgtttaaaaacaaatatagaaaag 111  Q
    ||||||||| |||||||||||||| |   ||||||||||||| ||||||||||||||||||||||||||   |||||||||||||    ||||| |||||    
T  27679488 atcacaatcacatccatgtactaagaatgtattatacatttctaactatttcgacatataaataactaatagtacttgtttaaaactgtatataaaaaag 27679389  T
Q  112 gtatttcccatttaaccttttaagatgagattattgt 148  Q
    ||||||||| ||||||| |||||||||||||||||||    
T  27679388 gtatttcccttttaacc-tttaagatgagattattgt 27679353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 40 - 117
Target Start/End: Original strand, 27604375 - 27604452
Alignment:
Q  40 aatatattatacatttcaaactatttcgacatataaataactaatacttgtttaaaaacaaatatagaaaaggtattt 117  Q
    ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||  | ||| |||||||||||    
T  27604375 aatatattatacatttctaactattttgacatataaataactaatacttgtttaaaaacgtaaataaaaaaggtattt 27604452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 22 - 148
Target Start/End: Original strand, 27706052 - 27706182
Alignment:
Q  22 caatcgcatccatgtactaata---tattatacatttcaaactatttcgacatataaataactaa---tacttgtttaaaaacaaatatagaaaaggtat 115  Q
    ||||| |||||||||||||| |   |||||| |||||| ||||||||||||||||||||||||||   |||||||||||||    ||||| |||||||||    
T  27706052 caatcacatccatgtactaagaatgtattattcatttctaactatttcgacatataaataactaatagtacttgtttaaaactgtatataaaaaaggtat 27706151  T
Q  116 ttcccatttaaccttttaagatgagattattgt 148  Q
    ||||| || |||  |||||||||||||||||||    
T  27706152 ttccctttaaac--tttaagatgagattattgt 27706182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 20 - 113
Target Start/End: Original strand, 27427260 - 27427356
Alignment:
Q  20 cacaatcgcatccatgtact---aatatattatacatttcaaactatttcgacatataaataactaatacttgtttaaaaacaaatatagaaaaggt 113  Q
    ||||||| ||||||||||||   ||||||||||||||||  |||||||| ||||||||||||||||| | ||||||||||||| | ||| |||||||    
T  27427260 cacaatcacatccatgtactcataatatattatacatttttaactattttgacatataaataactaacaattgtttaaaaacataaataaaaaaggt 27427356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 18 - 120
Target Start/End: Complemental strand, 28786776 - 28786670
Alignment:
Q  18 atcacaatcgcatccatgtact---aatatattatacatttcaaactatttcgacatataaataactaa-tacttgtttaaaaacaaatatagaaaaggt 113  Q
    ||||||||| ||||||||||||   |||||| |||||||||| |||||||| |||||| |||||| ||| |||||||||||||||  | |||||||||||    
T  28786776 atcacaatcacatccatgtactcagaatatagtatacatttctaactattttgacataaaaataattaaatacttgtttaaaaacgtaaatagaaaaggt 28786677  T
Q  114 atttccc 120  Q
     ||||||    
T  28786676 gtttccc 28786670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 18 - 120
Target Start/End: Complemental strand, 28792897 - 28792791
Alignment:
Q  18 atcacaatcgcatccatgtact---aatatattatacatttcaaactatttcgacatataaataactaa-tacttgtttaaaaacaaatatagaaaaggt 113  Q
    ||||||||| ||||||||||||   |||||| |||||||||| |||||||| |||||| |||||| ||| |||||||||||||||  | |||||||||||    
T  28792897 atcacaatcacatccatgtactcagaatatagtatacatttctaactattttgacataaaaataattaaatacttgtttaaaaacgtaaatagaaaaggt 28792798  T
Q  114 atttccc 120  Q
     ||||||    
T  28792797 gtttccc 28792791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 27698230 - 27698301
Alignment:
Q  18 atcacaatcgcatccatgtact---aatatattatacatttcaaactatttcgacatataaataactaatac 86  Q
    ||||||||| |||| |||||||   ||||||||||| ||||| |||||||||||||||||||||||||||||    
T  27698230 atcacaatcacatctatgtactcagaatatattataaatttctaactatttcgacatataaataactaatac 27698301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 18 - 125
Target Start/End: Complemental strand, 28781639 - 28781528
Alignment:
Q  18 atcacaatcgcatccatgtact---aatatattatacatttcaaactatttcgacatataaataactaa-tacttgtttaaaaacaaatatagaaaaggt 113  Q
    ||||||||| ||||||||||||   |||||| |||||||||| |||||||| |||||| |||||| ||| || ||||||||||||  | |||||||| ||    
T  28781639 atcacaatcacatccatgtactcagaatatagtatacatttctaactattttgacataaaaataattaaataattgtttaaaaacgtaaatagaaaaagt 28781540  T
Q  114 atttcccattta 125  Q
     |||||||||||    
T  28781539 gtttcccattta 28781528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 99
Target Start/End: Complemental strand, 26646990 - 26646931
Alignment:
Q  40 aatatattatacatttcaaactatttcgacatataaataactaatacttgtttaaaaaca 99  Q
    ||||||||||||| ||| |||| ||| ||||||||||||| | |||||||||||||||||    
T  26646990 aatatattatacagttctaactcttttgacatataaataatttatacttgtttaaaaaca 26646931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 99
Target Start/End: Complemental strand, 26752958 - 26752899
Alignment:
Q  40 aatatattatacatttcaaactatttcgacatataaataactaatacttgtttaaaaaca 99  Q
    ||||||||||||| ||| |||| ||| ||||||||||||| | |||||||||||||||||    
T  26752958 aatatattatacagttctaactcttttgacatataaataatttatacttgtttaaaaaca 26752899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 20 - 113
Target Start/End: Complemental strand, 60103 - 60007
Alignment:
Q  20 cacaatcgcatccatgtact---aatatattatacatttcaaactatttcgacatataaataactaatacttgtttaaaaacaaatatagaaaaggt 113  Q
    ||||||| ||||||||||||   ||||||||||||||||  |||||||| ||||||||||||||||| | ||||||||||||| | ||| |||||||    
T  60103 cacaatcacatccatgtactcataatatattatacatttttaactattttgacatataaataactaacaattgtttaaaaacataaataaaaaaggt 60007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 20 - 113
Target Start/End: Complemental strand, 18074295 - 18074199
Alignment:
Q  20 cacaatcgcatccatgtact---aatatattatacatttcaaactatttcgacatataaataactaatacttgtttaaaaacaaatatagaaaaggt 113  Q
    ||||||| ||||||||||||   ||||||||||||||||  |||||||| ||||||||||||||||| | ||||||||||||| | ||| |||||||    
T  18074295 cacaatcacatccatgtactcataatatattatacatttttaactattttgacatataaataactaacaattgtttaaaaacataaataaaaaaggt 18074199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 39 - 97
Target Start/End: Original strand, 18655141 - 18655199
Alignment:
Q  39 taatatattatacatttcaaactatttcgacatataaataactaatacttgtttaaaaa 97  Q
    |||||||| ||||||||| |||||||| ||| |||||||||||||||||||||||||||    
T  18655141 taatatatcatacatttctaactattttgacttataaataactaatacttgtttaaaaa 18655199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 39 - 97
Target Start/End: Original strand, 18723749 - 18723807
Alignment:
Q  39 taatatattatacatttcaaactatttcgacatataaataactaatacttgtttaaaaa 97  Q
    |||||||| ||||||||| |||||||| ||| |||||||||||||||||||||||||||    
T  18723749 taatatatcatacatttctaactattttgacttataaataactaatacttgtttaaaaa 18723807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 39 - 97
Target Start/End: Original strand, 18731168 - 18731226
Alignment:
Q  39 taatatattatacatttcaaactatttcgacatataaataactaatacttgtttaaaaa 97  Q
    |||||||| ||||||||| |||||||| ||| |||||||||||||||||||||||||||    
T  18731168 taatatatcatacatttctaactattttgacttataaataactaatacttgtttaaaaa 18731226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 42 - 98
Target Start/End: Original strand, 18699067 - 18699123
Alignment:
Q  42 tatattatacatttcaaactatttcgacatataaataactaatacttgtttaaaaac 98  Q
    ||||| ||||||||| |||||||| ||| ||||||||||||||||||||||||||||    
T  18699067 tatatcatacatttctaactattttgacttataaataactaatacttgtttaaaaac 18699123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 54 - 98
Target Start/End: Original strand, 18679246 - 18679290
Alignment:
Q  54 ttcaaactatttcgacatataaataactaatacttgtttaaaaac 98  Q
    |||||||||||| ||| ||||||||||||||||||||||||||||    
T  18679246 ttcaaactattttgacttataaataactaatacttgtttaaaaac 18679290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 18 - 125
Target Start/End: Complemental strand, 8025 - 7914
Alignment:
Q  18 atcacaatcgcatccatgtact---aatatattatacatttcaaactatttcgacatataaataactaa-tacttgtttaaaaacaaatatagaaaaggt 113  Q
    ||||||||| ||||||||||||   |||||| |||||||||| |||||||| |||||| || ||| ||| |||||||||||||||  | |||||||| ||    
T  8025 atcacaatcacatccatgtactcagaatatagtatacatttctaactattttgacataaaagtaattaaatacttgtttaaaaacgtaaatagaaaaagt 7926  T
Q  114 atttcccattta 125  Q
     |||||||||||    
T  7925 gtttcccattta 7914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 18 - 125
Target Start/End: Original strand, 13319 - 13430
Alignment:
Q  18 atcacaatcgcatccatgtact---aatatattatacatttcaaactatttcgacatataaataactaa-tacttgtttaaaaacaaatatagaaaaggt 113  Q
    ||||||||| ||||||||||||   |||||| |||||||||| |||||||| |||||| || ||| ||| |||||||||||||||  | |||||||| ||    
T  13319 atcacaatcacatccatgtactcagaatatagtatacatttctaactattttgacataaaagtaattaaatacttgtttaaaaacgtaaatagaaaaagt 13418  T
Q  114 atttcccattta 125  Q
     |||||||||||    
T  13419 gtttcccattta 13430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 125
Target Start/End: Original strand, 4356 - 4469
Alignment:
Q  18 atcacaatcgcatccatgtact---aatatat--tatacatttcaaactatttcgacatataaataactaa-tacttgtttaaaaacaaatatagaaaag 111  Q
    ||||||||| ||||||||||||   |||||||  |||||||||| |||||||  |||||| || ||| ||| |||||||||||||||  | ||| |||||    
T  4356 atcacaatcacatccatgtactcataatatatggtatacatttctaactattgtgacataaaagtaattaaatacttgtttaaaaacgtaaatataaaag 4455  T
Q  112 gtatttcccattta 125  Q
    || |||||||||||    
T  4456 gtgtttcccattta 4469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 40 - 98
Target Start/End: Original strand, 268021 - 268079
Alignment:
Q  40 aatatattatacatttcaaactatttcgacatataaataactaatacttgtttaaaaac 98  Q
    |||||||||||| |||| |||||||||| |||||||| ||||||||||| |||| ||||    
T  268021 aatatattatacgtttctaactatttcgtcatataaacaactaatacttatttagaaac 268079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 58 - 99
Target Start/End: Original strand, 28164051 - 28164092
Alignment:
Q  58 aactatttcgacatataaataactaatacttgtttaaaaaca 99  Q
    |||||||| |||||||||||| || |||||||||||||||||    
T  28164051 aactattttgacatataaatatcttatacttgtttaaaaaca 28164092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 99
Target Start/End: Original strand, 28127352 - 28127392
Alignment:
Q  59 actatttcgacatataaataactaatacttgtttaaaaaca 99  Q
    ||||||| |||||||||||| || |||||||||||||||||    
T  28127352 actattttgacatataaataccttatacttgtttaaaaaca 28127392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University