View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18536_high_5 (Length: 434)
Name: NF18536_high_5
Description: NF18536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18536_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 408; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 1 - 433
Target Start/End: Original strand, 5365683 - 5366115
Alignment:
| Q |
1 |
cttcaaaaagagttggccactgagtgcaataagtgttactaatatcaattatgtgcagcttggaatcaccttcgaaggcttctaaaatggcgccattgca |
100 |
Q |
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| T |
5365683 |
cttcaaaaagagttggccactgagtgcaataagtgttactaatatcaattatgtgcagcttggaatcaccttcgaaggcttctaaaatggcgccattgca |
5365782 |
T |
|
| Q |
101 |
tgcgacatggccgaaggttgtccacggactaacttcttggaattttagaaccgtttttcttgttgattcgaaagagcaagttttttctgatgctgaagct |
200 |
Q |
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| T |
5365783 |
tgcgacatggccgaaggttgtccacggactaacttcttggaattttagaaccgtttttcttgttgattcgaaagagcaagttttttctgatgctgaagct |
5365882 |
T |
|
| Q |
201 |
agggttcggaaggttcgggtaccggcttcggtcattcgagagaataaggcttggagaaaatatgcagctagtttttgttctatgtcaccataaggggagc |
300 |
Q |
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| T |
5365883 |
agggttcggaaggttcgggtaccggcttcggtcattcgagagaataaggcttggagaaaatatgcagctagtttttgttctatgtcaccataaggggagc |
5365982 |
T |
|
| Q |
301 |
ttagttcgttaagcatccacatgagttgttgtaaacgagtgctgnnnnnnnctgctatggctcgtgctgtttcgaggaggatgttgttggcccactttcc |
400 |
Q |
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| T |
5365983 |
ttagttcgttaagcatccacatgagttgttgtaaacgagtgctgtttttttctgctatggctcgtgctgtttcgaggaggatgttgttggcccaccttcc |
5366082 |
T |
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| Q |
401 |
ggttaattcgaaggtgaaatcagctgttggtgg |
433 |
Q |
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| T |
5366083 |
ggttaattcgaaggtgaaatcagctgttggtgg |
5366115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 12 - 142
Target Start/End: Complemental strand, 39987640 - 39987510
Alignment:
| Q |
12 |
gttggccactgagtgcaataagtgttactaatatcaattatgtgcagcttggaatcaccttcgaaggcttctaaaatggcgccattgcatgcgacatggc |
111 |
Q |
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|||||||| ||||||||||||||||| ||||||||||||||||| || || | | |||||| || |||||||| || || || || ||| || || | |
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| T |
39987640 |
gttggccattgagtgcaataagtgttgctaatatcaattatgtgaagtttagggttaccttccaatgcttctaagatagcaccgttagctgccacgtgtc |
39987541 |
T |
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| Q |
112 |
cgaaggttgtccacggactaacttcttggaa |
142 |
Q |
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| T |
39987540 |
caaacgttgtccatggactaacttcttggaa |
39987510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 270 - 331
Target Start/End: Complemental strand, 39987382 - 39987321
Alignment:
| Q |
270 |
agtttttgttctatgtcaccataaggggagcttagttcgttaagcatccacatgagttgttg |
331 |
Q |
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|||||||| ||| |||||||||| |||| || || ||||| |||||||||||||||||||| |
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| T |
39987382 |
agtttttgatctgtgtcaccatatggggtactaagctcgtttagcatccacatgagttgttg |
39987321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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